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The map label for this gene is cdaR [H]

Identifier: 167039695

GI number: 167039695

Start: 1078683

End: 1079735

Strand: Direct

Name: cdaR [H]

Synonym: Teth514_1045

Alternate gene names: 167039695

Gene position: 1078683-1079735 (Clockwise)

Preceding gene: 167039694

Following gene: 167039696

Centisome position: 43.9

GC content: 26.69

Gene sequence:

>1053_bases
ATGATCGGCTATGACCTTATAAAAAAGGTGGCTTACGATATTCAAAAAAATCTTCAAATGCCGTTATATATAATAGATAA
GTCAGGAAATTTAATTTACGGTAACAAAGATTTTTTTGAAAAAAAAGCAGGATTTTTAGAGATAAAGGTAGAATATATTG
ATGAAAAAGATATATATGAAGTAGGAGAATTTATATGCTATAACATATTTTACAATAATGTTCTCTTTTTTACTATCGCT
TTAGAAAGAAAAGATGAACAATCAAAAAAAGTGCTTTATCTAATTTCTCTAATTTTTGAACAATTGCTGCAGAAATATAA
TAGAGAAGAGTTTTTGATAGAGGCTTTAACAGGTAAATTAAGCGTAAATTTAGTGTCGTATTATGCTGAAAAATATAAAA
TAAATAAGAATGTGAAATACACAGTAGCAATTGTCGAATCGAATAATGAAATTGATGATGCGATAAAGATAATTACAAAT
ATTTTTGATAAAGGCAATTTATATACTGTAAAATTTGATGATAAAAGATTTGTAACGATATTTTCTTACAAAGGAAATAA
CTCTTTAATAGAACTTTATAAAACTATGAAAGATATGATAGAATCTGAAGGCTATATGAAAGTAAAAATAGCTAGTTCTT
CTTCCTTTGTGCCAATTGAGAATATACATATCGCCTATAGGGAAGCAGAGACAGCCTTACTTATTGGACAAAAATTGGAA
GATGAAAAAGGAATATATATTTACGAAGATTACAGCTTTCCAGAAATTTTATGGGGAATTGATATAGAGAAGGTAAATAA
TTTTATTAAAAAAAGAAATATTGATTTTGGTATTTTCAAAGATGAGGAATTGATACAAACCTTAAATGCTTTTTTCAGGA
ATAGTTTAAATTTGAGTGAGACTGCCAGAGAGTTATACATTCATAGGAATACATTAGTTTATAGACTTGATAAAATTTTT
AAAATGACAGGTCTGGATGCTAAAAATTTTGATGATGCTGTCCTATTAAAGACGATCATGATTTTGACCAAATTATATAA
TATTCCGAGGTGA

Upstream 100 bases:

>100_bases
TTTTTTGTGTCAAAATACCACATAAATTTACATTTGCCTATTATTTCTTCTAGGAAATAGTGTATAATTATTGTATACTA
TAAAGTAAGGTGGTATGAAA

Downstream 100 bases:

>100_bases
GAAAATTTGATTAAATTTATAAATGTATCCAAAAGATACAATAAAGATATAATTGCTCTTTCAAATATTAGTTTTGAAAT
TGAAAGTGGGGAATTTGTAT

Product: transcriptional regulator CdaR

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MIGYDLIKKVAYDIQKNLQMPLYIIDKSGNLIYGNKDFFEKKAGFLEIKVEYIDEKDIYEVGEFICYNIFYNNVLFFTIA
LERKDEQSKKVLYLISLIFEQLLQKYNREEFLIEALTGKLSVNLVSYYAEKYKINKNVKYTVAIVESNNEIDDAIKIITN
IFDKGNLYTVKFDDKRFVTIFSYKGNNSLIELYKTMKDMIESEGYMKVKIASSSSFVPIENIHIAYREAETALLIGQKLE
DEKGIYIYEDYSFPEILWGIDIEKVNNFIKKRNIDFGIFKDEELIQTLNAFFRNSLNLSETARELYIHRNTLVYRLDKIF
KMTGLDAKNFDDAVLLKTIMILTKLYNIPR

Sequences:

>Translated_350_residues
MIGYDLIKKVAYDIQKNLQMPLYIIDKSGNLIYGNKDFFEKKAGFLEIKVEYIDEKDIYEVGEFICYNIFYNNVLFFTIA
LERKDEQSKKVLYLISLIFEQLLQKYNREEFLIEALTGKLSVNLVSYYAEKYKINKNVKYTVAIVESNNEIDDAIKIITN
IFDKGNLYTVKFDDKRFVTIFSYKGNNSLIELYKTMKDMIESEGYMKVKIASSSSFVPIENIHIAYREAETALLIGQKLE
DEKGIYIYEDYSFPEILWGIDIEKVNNFIKKRNIDFGIFKDEELIQTLNAFFRNSLNLSETARELYIHRNTLVYRLDKIF
KMTGLDAKNFDDAVLLKTIMILTKLYNIPR
>Mature_350_residues
MIGYDLIKKVAYDIQKNLQMPLYIIDKSGNLIYGNKDFFEKKAGFLEIKVEYIDEKDIYEVGEFICYNIFYNNVLFFTIA
LERKDEQSKKVLYLISLIFEQLLQKYNREEFLIEALTGKLSVNLVSYYAEKYKINKNVKYTVAIVESNNEIDDAIKIITN
IFDKGNLYTVKFDDKRFVTIFSYKGNNSLIELYKTMKDMIESEGYMKVKIASSSSFVPIENIHIAYREAETALLIGQKLE
DEKGIYIYEDYSFPEILWGIDIEKVNNFIKKRNIDFGIFKDEELIQTLNAFFRNSLNLSETARELYIHRNTLVYRLDKIF
KMTGLDAKNFDDAVLLKTIMILTKLYNIPR

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=379, Percent_Identity=23.7467018469657, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 41206; Mature: 41206

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGYDLIKKVAYDIQKNLQMPLYIIDKSGNLIYGNKDFFEKKAGFLEIKVEYIDEKDIYE
CCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCHHHHHHCCCEEEEEEEECCCCHHHH
VGEFICYNIFYNNVLFFTIALERKDEQSKKVLYLISLIFEQLLQKYNREEFLIEALTGKL
HHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHH
SVNLVSYYAEKYKINKNVKYTVAIVESNNEIDDAIKIITNIFDKGNLYTVKFDDKRFVTI
HHHHHHHHHHHHEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
FSYKGNNSLIELYKTMKDMIESEGYMKVKIASSSSFVPIENIHIAYREAETALLIGQKLE
EEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCC
DEKGIYIYEDYSFPEILWGIDIEKVNNFIKKRNIDFGIFKDEELIQTLNAFFRNSLNLSE
CCCCEEEEECCCCCHHEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHH
TARELYIHRNTLVYRLDKIFKMTGLDAKNFDDAVLLKTIMILTKLYNIPR
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIGYDLIKKVAYDIQKNLQMPLYIIDKSGNLIYGNKDFFEKKAGFLEIKVEYIDEKDIYE
CCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCHHHHHHCCCEEEEEEEECCCCHHHH
VGEFICYNIFYNNVLFFTIALERKDEQSKKVLYLISLIFEQLLQKYNREEFLIEALTGKL
HHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHH
SVNLVSYYAEKYKINKNVKYTVAIVESNNEIDDAIKIITNIFDKGNLYTVKFDDKRFVTI
HHHHHHHHHHHHEECCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCEEEEE
FSYKGNNSLIELYKTMKDMIESEGYMKVKIASSSSFVPIENIHIAYREAETALLIGQKLE
EEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEECCCEEEEECCCCC
DEKGIYIYEDYSFPEILWGIDIEKVNNFIKKRNIDFGIFKDEELIQTLNAFFRNSLNLSE
CCCCEEEEECCCCCHHEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHH
TARELYIHRNTLVYRLDKIFKMTGLDAKNFDDAVLLKTIMILTKLYNIPR
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]