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The map label for this gene is ygaF [C]

Identifier: 167039671

GI number: 167039671

Start: 1051457

End: 1052959

Strand: Direct

Name: ygaF [C]

Synonym: Teth514_1021

Alternate gene names: 167039671

Gene position: 1051457-1052959 (Clockwise)

Preceding gene: 167039670

Following gene: 167039672

Centisome position: 42.79

GC content: 35.4

Gene sequence:

>1503_bases
ATGAAAGAAATGTACGATGTTTTGATAATAGGTGCTGGAGTGGTTGGATGTTCAATTGCGAGAGAACTTTCAAAATACAA
ATTAAAAATATTAGTTGTAGAAAAAGGTGAAGATGTGGCTTCGGAAGGAGCTTCTAAAGCTAATAGTGCAATACTACATG
CGGGTTATGACCCTGTACCTGGTACTTTAAAAGCTATGCTGAATGTCAGAGGAAATGAAATGTACGATGAGTTGTGTAAA
GATTTGGATGTTCCAATAAAGAGAACAGGTTCTTTAGTTGTGGCTTTTTCTGAAGAAGAGGTAAAAGAGCTCTATGAATT
GTTTGATAGAGGAATAAAAAATGGTGTCAAAGGGTTGTCTCTCATTACAAAAGATATGGTCAAAGAGATAGAACCACACA
TAAATGACACTGTAGTTGCTGCTTTGTATGCCAAAACAGCAGGAATAATATGTCCTTATGGATATACTATTGCAGTGGCA
GAAAATGCTGCACAAAATGGAGCAGAATTTGTTTTTAATTCAGAAGTAATTGATATCAAAAAAAATGGGGACTTCTTTAT
AGTAAAAACTCACAAAGAAGAATTTTACAGTAAATATGTTGTCAATGCTGCAGGACTTTATTCAGATGTCATAAATAACA
TGGTAGGGGCGAAGCCATTTTCTGTGCATCCTAGAAAAGGAGAATATTTGATATTAGATAAAGACCAAGGATATCTTGCA
AGGACAGTAATATTCCAGGTTCCAACTAAAATGGGTAAAGGAATACTAGTTTCTCCTACAGTTGATGGAAATCTATTGAT
AGGACCTACTTCAGAAGACATACAAGATAAAGAATTTAAAGCAACTACCAGAGAAGGGCTCAATAAAGCAATTACAGTTG
CAAAAAGAAGTGTGGATAAATTTGATGTCAGAAAGACTATCACTCAGTTTACAGGACTTAGAGCGACTCCTGATACAGAA
GACAAAGACTTTATAATTGGAGAATCTGATGTGAAAGGATTTATAAATGCTGCTGGAATAGAATCTCCTGGTTTTACTGC
AGCTCCTGCTATCGCTGAAATGATAAGGGATATACTTAAAGATGCTGGACTTCAGTTGATTGAAAAAGTAGATTTTAACC
CAAAAAGAAAACCAGTCATAAGATTTACTGAACTTTCAGACGAGGAAAGAAACAAGCTTATAAAAGAAAATCCTGCTTAT
GGAAGAATAATATGCAGATGTGAGACAGTGACGGAAGGAGAGATAATAGATGCGATAAGAAGACCTGTAGGTGCAAAATC
TTTAGATGGTGTTAAAAGGCGTGTAAGAGCTGGAATGGGAAGATGCCAGGGAAGTTTTTGTGGGCCGAGAGTTGTTGAAA
TATTAGCAAGAGAACTTAATATTTCTCCTCTTGAGGTTACAAAGCATGGAAGAAATTCGAATATACTAACTGCAGAGACA
AAAAAATTTTTATTAGAAAAAGCATCGGAGGTTTTAAAGAAAGAGGTGTATGAGAATGCTTAA

Upstream 100 bases:

>100_bases
AAAAATAAATATGAGTATGGTGGAGATTTGGAGAACCATATATAGCCGACAGGGGTCGGTTATATATGGTTTTTTTATCT
TTTAAGGAGGTTTTATGACT

Downstream 100 bases:

>100_bases
CTATGATATAGTCATAATAGGTGGCGGCCCTGCAGGCTTGGGTGCTGCTGTAGAAGCCTATGAAAAGGGTGTAAAAAATA
TAGTCATAATTGAAAGAGAT

Product: FAD dependent oxidoreductase

Products: glycerone phosphate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MKEMYDVLIIGAGVVGCSIARELSKYKLKILVVEKGEDVASEGASKANSAILHAGYDPVPGTLKAMLNVRGNEMYDELCK
DLDVPIKRTGSLVVAFSEEEVKELYELFDRGIKNGVKGLSLITKDMVKEIEPHINDTVVAALYAKTAGIICPYGYTIAVA
ENAAQNGAEFVFNSEVIDIKKNGDFFIVKTHKEEFYSKYVVNAAGLYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYLA
RTVIFQVPTKMGKGILVSPTVDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTE
DKDFIIGESDVKGFINAAGIESPGFTAAPAIAEMIRDILKDAGLQLIEKVDFNPKRKPVIRFTELSDEERNKLIKENPAY
GRIICRCETVTEGEIIDAIRRPVGAKSLDGVKRRVRAGMGRCQGSFCGPRVVEILARELNISPLEVTKHGRNSNILTAET
KKFLLEKASEVLKKEVYENA

Sequences:

>Translated_500_residues
MKEMYDVLIIGAGVVGCSIARELSKYKLKILVVEKGEDVASEGASKANSAILHAGYDPVPGTLKAMLNVRGNEMYDELCK
DLDVPIKRTGSLVVAFSEEEVKELYELFDRGIKNGVKGLSLITKDMVKEIEPHINDTVVAALYAKTAGIICPYGYTIAVA
ENAAQNGAEFVFNSEVIDIKKNGDFFIVKTHKEEFYSKYVVNAAGLYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYLA
RTVIFQVPTKMGKGILVSPTVDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTE
DKDFIIGESDVKGFINAAGIESPGFTAAPAIAEMIRDILKDAGLQLIEKVDFNPKRKPVIRFTELSDEERNKLIKENPAY
GRIICRCETVTEGEIIDAIRRPVGAKSLDGVKRRVRAGMGRCQGSFCGPRVVEILARELNISPLEVTKHGRNSNILTAET
KKFLLEKASEVLKKEVYENA
>Mature_500_residues
MKEMYDVLIIGAGVVGCSIARELSKYKLKILVVEKGEDVASEGASKANSAILHAGYDPVPGTLKAMLNVRGNEMYDELCK
DLDVPIKRTGSLVVAFSEEEVKELYELFDRGIKNGVKGLSLITKDMVKEIEPHINDTVVAALYAKTAGIICPYGYTIAVA
ENAAQNGAEFVFNSEVIDIKKNGDFFIVKTHKEEFYSKYVVNAAGLYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYLA
RTVIFQVPTKMGKGILVSPTVDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDKFDVRKTITQFTGLRATPDTE
DKDFIIGESDVKGFINAAGIESPGFTAAPAIAEMIRDILKDAGLQLIEKVDFNPKRKPVIRFTELSDEERNKLIKENPAY
GRIICRCETVTEGEIIDAIRRPVGAKSLDGVKRRVRAGMGRCQGSFCGPRVVEILARELNISPLEVTKHGRNSNILTAET
KKFLLEKASEVLKKEVYENA

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=281, Percent_Identity=30.9608540925267, Blast_Score=122, Evalue=7e-28,
Organism=Escherichia coli, GI87082148, Length=274, Percent_Identity=27.007299270073, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788574, Length=483, Percent_Identity=23.6024844720497, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565764, Length=279, Percent_Identity=32.9749103942652, Blast_Score=135, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24585081, Length=278, Percent_Identity=33.0935251798561, Blast_Score=109, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5

Molecular weight: Translated: 55051; Mature: 55051

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEMYDVLIIGAGVVGCSIARELSKYKLKILVVEKGEDVASEGASKANSAILHAGYDPVP
CCCCEEEEEECCCHHHHHHHHHHHHCEEEEEEEECCCCHHHHCCCHHCCEEEECCCCCCC
GTLKAMLNVRGNEMYDELCKDLDVPIKRTGSLVVAFSEEEVKELYELFDRGIKNGVKGLS
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
LITKDMVKEIEPHINDTVVAALYAKTAGIICPYGYTIAVAENAAQNGAEFVFNSEVIDIK
HHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCEEEEECCCCCCCCCEEECCEEEEEE
KNGDFFIVKTHKEEFYSKYVVNAAGLYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYLA
ECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEE
RTVIFQVPTKMGKGILVSPTVDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDK
HHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDVRKTITQFTGLRATPDTEDKDFIIGESDVKGFINAAGIESPGFTAAPAIAEMIRDILK
HHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
DAGLQLIEKVDFNPKRKPVIRFTELSDEERNKLIKENPAYGRIICRCETVTEGEIIDAIR
HHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
RPVGAKSLDGVKRRVRAGMGRCQGSFCGPRVVEILARELNISPLEVTKHGRNSNILTAET
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEHCCCCCCCCEEEHHH
KKFLLEKASEVLKKEVYENA
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEMYDVLIIGAGVVGCSIARELSKYKLKILVVEKGEDVASEGASKANSAILHAGYDPVP
CCCCEEEEEECCCHHHHHHHHHHHHCEEEEEEEECCCCHHHHCCCHHCCEEEECCCCCCC
GTLKAMLNVRGNEMYDELCKDLDVPIKRTGSLVVAFSEEEVKELYELFDRGIKNGVKGLS
HHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
LITKDMVKEIEPHINDTVVAALYAKTAGIICPYGYTIAVAENAAQNGAEFVFNSEVIDIK
HHHHHHHHHHCCCCCHHHHHHHHHHHCCEECCCCCEEEEECCCCCCCCCEEECCEEEEEE
KNGDFFIVKTHKEEFYSKYVVNAAGLYSDVINNMVGAKPFSVHPRKGEYLILDKDQGYLA
ECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEE
RTVIFQVPTKMGKGILVSPTVDGNLLIGPTSEDIQDKEFKATTREGLNKAITVAKRSVDK
HHHHHHHHHHHCCCEEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDVRKTITQFTGLRATPDTEDKDFIIGESDVKGFINAAGIESPGFTAAPAIAEMIRDILK
HHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
DAGLQLIEKVDFNPKRKPVIRFTELSDEERNKLIKENPAYGRIICRCETVTEGEIIDAIR
HHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHH
RPVGAKSLDGVKRRVRAGMGRCQGSFCGPRVVEILARELNISPLEVTKHGRNSNILTAET
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEHCCCCCCCCEEEHHH
KKFLLEKASEVLKKEVYENA
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sn-glycerol 3-phosphate; acceptor

Specific reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]