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The map label for this gene is xylR [H]

Identifier: 167039407

GI number: 167039407

Start: 779703

End: 780929

Strand: Direct

Name: xylR [H]

Synonym: Teth514_0752

Alternate gene names: 167039407

Gene position: 779703-780929 (Clockwise)

Preceding gene: 167039405

Following gene: 167039408

Centisome position: 31.73

GC content: 29.75

Gene sequence:

>1227_bases
ATGAAACTAAGGATAGGAAACAAGGAACTTATAAAAGATATTAATCGCTCTTTAGTAATAAATGAAATAAGAATGAACGG
ACCTATTAGCCGTACTGATATTTCAAAAAATCTTAATTTAGGATTATCTACTGTTACAAACATTGTTGAAGAATTAGAAA
GCCAAAATCTCGTTCATGAAGTAGGAGAGGCTGATTCTACAGGTGGAAGAAAACCTATTCTTTTGGAATTTAATTATAAT
TACGGATATATTATAGGCATTAAAATTGAGGAGAATAACTTGATATTTGCTTTGACAAATCTTAAAAGTGAGATTATTGA
AAAGAGAGTTGTACCATTTAAAAAAGGGACAAATAGTAATACGGTATTAAACATGGTGGTTGAAAACATAGAAAAATTAA
TTACAAAGATTCCTTATAACAAAAATTTGATGGGTATAGGAGTCGCAGTTTCTGGTTTAGTTGATCAACAAAAAGGAAAA
CTTATATATTCTGGTATGTTAAATTGGAGCAATGTTGAAATTGGTAATATTTTGGAAAATAAATTTAACGTTCCTGTATA
CATTGATAATGACGTGAATGCCTATACATTAGCTGAATTGTGGTATGGACATGGAAGAGAATTAAATAATTTTATAGTGG
TAACTTATGGTTCTGGTATTGGTTCAGGAATAGTAATTAATAAAAAATTGTATACTGGTGATTTTGGCGGTGCTGGAGAA
ATAGGACATATGGTGTTGGTTGCTGAAGGCAGAAAATGTGAATGCGGACAAAGGGGTTGCTTGGAAGCATATGCTTCAGA
AGATTTCATAGTAGATTATATTAGAGATAATATAAAAATGTATAGTGAAAGTAAAATAGATTTAACAGAAGATTTATCTA
TTGAAAAAGTCTATGAATATGCAAAAGAAGGAGATATGCTTGCGATTGATGTATTAAGGTTGTCTGCAAAATATTTGGGG
TATGGTTTATTAAGCGTGATAAATCTATTAAATCCATCAACAATAATTCTTGCAGGAGAAGGAATGATTGCTAAAGATAT
TATTTTACCTGTTATAAATGATATTGTAAAAAATAATTTTTTCAAAATGCATGAAAAAAAAGTACAGATAAAAGTATCTG
AACTTGGAGATGAAGGATGGGTGATTGGTGCTTCAACATTAGCGATTAGCAAACTTTTTGAAATACCTTTGTATGAAGGG
CAAGATAATGCATTAACAGTATTTTAA

Upstream 100 bases:

>100_bases
ATATTAGCTTTTGACAAAGAAATAAAATTTTTAATTTTTTATTAAAAAGATACTTGATTCAGTGAAAAAAGTATGTTATT
ATATATACAGGTGATGGCAA

Downstream 100 bases:

>100_bases
GTGAGTTTAATTAATTTATTTTTAATACTTCATTCACTGAAAAAAGTTGAAGGGAGGGGTAAAGGGAACAAATTAAATAA
ATATTTGACTTATAGATTTG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELESQNLVHEVGEADSTGGRKPILLEFNYN
YGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGK
LIYSGMLNWSNVEIGNILENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE
IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEYAKEGDMLAIDVLRLSAKYLG
YGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNFFKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYEG
QDNALTVF

Sequences:

>Translated_408_residues
MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELESQNLVHEVGEADSTGGRKPILLEFNYN
YGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGK
LIYSGMLNWSNVEIGNILENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE
IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEYAKEGDMLAIDVLRLSAKYLG
YGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNFFKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYEG
QDNALTVF
>Mature_408_residues
MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELESQNLVHEVGEADSTGGRKPILLEFNYN
YGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGK
LIYSGMLNWSNVEIGNILENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE
IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEYAKEGDMLAIDVLRLSAKYLG
YGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNFFKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYEG
QDNALTVF

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566325, Length=280, Percent_Identity=31.0714285714286, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI298566315, Length=280, Percent_Identity=31.0714285714286, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI4885285, Length=260, Percent_Identity=32.3076923076923, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI190014632, Length=280, Percent_Identity=31.0714285714286, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI298566312, Length=121, Percent_Identity=33.0578512396694, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1786891, Length=392, Percent_Identity=30.8673469387755, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1787878, Length=388, Percent_Identity=26.8041237113402, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI87082127, Length=384, Percent_Identity=23.1770833333333, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787363, Length=296, Percent_Identity=22.6351351351351, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081733, Length=275, Percent_Identity=25.4545454545455, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 45362; Mature: 45362

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELESQNLVHE
CEEECCCHHHHHHCCHHEEEEEEECCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCHHHHH
VGEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSN
HCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEECHHHHHHHHHCCCCCCCCCCC
TVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSNVEIGNILEN
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCEEEEECCCCCCEEHHHHHHC
KFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE
CCCCCEEECCCCCEEEEEEHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCC
IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEY
CCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHH
AKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNF
HHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCH
FKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYEGQDNALTVF
HEECCEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCEECCCCCEEEC
>Mature Secondary Structure
MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELESQNLVHE
CEEECCCHHHHHHCCHHEEEEEEECCCCCCHHCCCCCCCCCHHHHHHHHHHHHHCHHHHH
VGEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSN
HCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEECHHHHHHHHHCCCCCCCCCCC
TVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSNVEIGNILEN
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHCCCCCEEEEECCCCCCEEHHHHHHC
KFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE
CCCCCEEECCCCCEEEEEEHHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCCCC
IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEY
CCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHH
AKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNF
HHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCH
FKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPLYEGQDNALTVF
HEECCEEEEEEEECCCCCCEEEEHHHHHHHHHHHCCCEECCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]