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The map label for this gene is ytxD [H]

Identifier: 167039155

GI number: 167039155

Start: 509158

End: 509976

Strand: Direct

Name: ytxD [H]

Synonym: Teth514_0494

Alternate gene names: 167039155

Gene position: 509158-509976 (Clockwise)

Preceding gene: 167039153

Following gene: 167039156

Centisome position: 20.72

GC content: 36.87

Gene sequence:

>819_bases
TTGGATATAGCTACAGTAGTAGGTATAGTTGTTGCAGTAGGGGCTATAATTTATGGATTTACATTAGGGGGGGGTACTGT
TACTTCTTTAATAGATGTACCTTCTGCTATAATAGTTTTGGGGGGTACTATAGGGGCTACTATAATTACTTATTCTATGG
ATAACATTAAAAAAGTGCCGAGACTTTTGGCAAGGGCTTTTAAAAATGAAAAGGATAATTATCTTGAGATAATAAAGTAT
TTTACTTATTTGGCTCAAAAAGCCAGAAGCGAAGGGCTTTTAAGCCTTGAATCCGAAATAGAATCTGAGGAGATAAAGAA
ATTTGATCCTATTTTGAAAGAGTGCTTAGAACTAGTCGTTGACGGATCTGATATGGAACTTATTAAAACGACTATGGAGA
ATAAGATATACGTAGAGGATATGGAAGCTAAAAAAGAAGCGGGTATTTTTGAGTCGGCGGGTGGTTATGCTCCTACAATG
GGTCTTATAGGAACAGTTATGGGACTTGTTCAAGCGTTGGGTAATTTAACTGAACCGGACAAATTAGGCCCTGCCGTAGC
GGTAGCATTTATAACTACACTGTATGGTGCCATTTTAGCAAACGTGTTTTTCCTTCCTATTGCTCAAAAATTAAAAAATA
GGGCTAAAGTAAAAACAACTGAAAGAGAATTAATATTAGAAGGAAGTCTTTCACTGCAAGCTGGGGAAAATCCAAGGATA
TTAGAGAGAAAGTTAATGACATTTGTCGCGCAGGCACAGCTTAAAAATACACCTCAGAAAGGTGGTGTAGAATTAAATGA
AGAGGTTGGAGGAAGATGA

Upstream 100 bases:

>100_bases
CAAAAAAATTTATTTTGTAAAAGTGTAGTAAACTATAACTTTTTTTAAATATGTGTCGATAAAAATTAATGAGTGTATTT
ATAAATGGAAGGTGATGGAC

Downstream 100 bases:

>100_bases
ATCAAAACCAAATCACGATAGATGGGTGCTTACTTACTCTGATATGATGAGTTTGCTTTTAGTATTTTTTATTGTACTGT
ACTCAATAAGTACTGTTAAT

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MDIATVVGIVVAVGAIIYGFTLGGGTVTSLIDVPSAIIVLGGTIGATIITYSMDNIKKVPRLLARAFKNEKDNYLEIIKY
FTYLAQKARSEGLLSLESEIESEEIKKFDPILKECLELVVDGSDMELIKTTMENKIYVEDMEAKKEAGIFESAGGYAPTM
GLIGTVMGLVQALGNLTEPDKLGPAVAVAFITTLYGAILANVFFLPIAQKLKNRAKVKTTERELILEGSLSLQAGENPRI
LERKLMTFVAQAQLKNTPQKGGVELNEEVGGR

Sequences:

>Translated_272_residues
MDIATVVGIVVAVGAIIYGFTLGGGTVTSLIDVPSAIIVLGGTIGATIITYSMDNIKKVPRLLARAFKNEKDNYLEIIKY
FTYLAQKARSEGLLSLESEIESEEIKKFDPILKECLELVVDGSDMELIKTTMENKIYVEDMEAKKEAGIFESAGGYAPTM
GLIGTVMGLVQALGNLTEPDKLGPAVAVAFITTLYGAILANVFFLPIAQKLKNRAKVKTTERELILEGSLSLQAGENPRI
LERKLMTFVAQAQLKNTPQKGGVELNEEVGGR
>Mature_272_residues
MDIATVVGIVVAVGAIIYGFTLGGGTVTSLIDVPSAIIVLGGTIGATIITYSMDNIKKVPRLLARAFKNEKDNYLEIIKY
FTYLAQKARSEGLLSLESEIESEEIKKFDPILKECLELVVDGSDMELIKTTMENKIYVEDMEAKKEAGIFESAGGYAPTM
GLIGTVMGLVQALGNLTEPDKLGPAVAVAFITTLYGAILANVFFLPIAQKLKNRAKVKTTERELILEGSLSLQAGENPRI
LERKLMTFVAQAQLKNTPQKGGVELNEEVGGR

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

Organism=Escherichia coli, GI1788199, Length=228, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 29405; Mature: 29405

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIATVVGIVVAVGAIIYGFTLGGGTVTSLIDVPSAIIVLGGTIGATIITYSMDNIKKVP
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH
RLLARAFKNEKDNYLEIIKYFTYLAQKARSEGLLSLESEIESEEIKKFDPILKECLELVV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DGSDMELIKTTMENKIYVEDMEAKKEAGIFESAGGYAPTMGLIGTVMGLVQALGNLTEPD
CCCCHHHHHHHHHCCEEEEHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
KLGPAVAVAFITTLYGAILANVFFLPIAQKLKNRAKVKTTERELILEGSLSLQAGENPRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCEECCCCCCHH
LERKLMTFVAQAQLKNTPQKGGVELNEEVGGR
HHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MDIATVVGIVVAVGAIIYGFTLGGGTVTSLIDVPSAIIVLGGTIGATIITYSMDNIKKVP
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHH
RLLARAFKNEKDNYLEIIKYFTYLAQKARSEGLLSLESEIESEEIKKFDPILKECLELVV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DGSDMELIKTTMENKIYVEDMEAKKEAGIFESAGGYAPTMGLIGTVMGLVQALGNLTEPD
CCCCHHHHHHHHHCCEEEEHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
KLGPAVAVAFITTLYGAILANVFFLPIAQKLKNRAKVKTTERELILEGSLSLQAGENPRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHEECCCEECCCCCCHH
LERKLMTFVAQAQLKNTPQKGGVELNEEVGGR
HHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]