Click here to switch to the map view.

The map label for this gene is yhdJ [C]

Identifier: 167039121

GI number: 167039121

Start: 473587

End: 474366

Strand: Direct

Name: yhdJ [C]

Synonym: Teth514_0460

Alternate gene names: 167039121

Gene position: 473587-474366 (Clockwise)

Preceding gene: 167039120

Following gene: 167039123

Centisome position: 19.27

GC content: 31.03

Gene sequence:

>780_bases
ATGCAGGATATAGATTTTAAAAAAGAAATAACTACTGTATGGTCGTTTCCTGAAAGGGGAAAATGGAAAACGCATAAGGG
AAATTACAGAGGCAATTTTGCACCTCAAATTCCAAGGAATGTTATATTAAGATATTCCCAGGAAGGAGATTTTGTACTCG
ACCCTATGGTTGGGAGTGGTACAACGCTAATAGAAACTAAAATATTAAATAGGCGAGGTATAGGTTTTGATATCAATCCA
GATAGTGTAGAGCTGACTAAAAGAAATTTAGACTTTGATGGAGATTATAAGTATGAGCAGGTTGTAAGGGTAGGGGATGT
GAGAAATTTAAAAGAGATTAGTGACATCAGCATTGATTTAATAATAACGCATCCGCCGTATTTAAATATTATAAAGTATT
CAAATGGGAGAATAGAAGGGGATTTATCAAATATATCTGATGTTAAAAAATTTTGCGATGAGTTGGAAAAAGGAGTTATC
GAACTTTATAGAGTTTTGAAAGAAGACAGATATTGTGCTATTTTAATAGGAGATACAAGAAAAAGCGGGCATTACATACC
TCTTTCATATTATGTAATGAGACTTTTCCTTAAGAATGGTTTTGTATTAAAGGAGGACATTATAAAAGTTCAACATAATT
GTAAGTCTACACCTTATTGGGAAAGACAGGTAGAGAAATATAACTTTTATATGATTATGCATGAACATTTATTTATATTT
AGAAAGCCTAAAAAAGATGAAAATTTAAATAAAATAAAATATAGCACGGGCTTATACTAA

Upstream 100 bases:

>100_bases
GATGGAGAGGACAGAAAAATCAAATTCATAAAGGATTTGAGAAAATAGATTATTTGTTAAATCTTCATTTTGTGCGTATT
GGTTTATTGGAGGAAATATT

Downstream 100 bases:

>100_bases
ATGGCGGGGATTTCCCGCCATTTAGCGTATTTTTATTTATTACACTATGGAAATTTTATAATCTTTTAGCCACATATTTA
TTTGCACGAGGTAGGCGAAA

Product: putative RNA methylase

Products: S-Adenosyl-L-Homocysteine; DNA 6-Methylaminopurine. [C]

Alternate protein names: RNA Methylase; DNA Methylase; DNA Methylase N-4/N-6 Domain Protein; Adenine-Specific DNA Methylase; DNA Adenine Methylase; DNA Methylase; DNA Methylase Domain Protein; Site-Specific DNA-Methyltransferase; Sensor Protein FixL; DNA Methylase-Like Protein

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MQDIDFKKEITTVWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRRGIGFDINP
DSVELTKRNLDFDGDYKYEQVVRVGDVRNLKEISDISIDLIITHPPYLNIIKYSNGRIEGDLSNISDVKKFCDELEKGVI
ELYRVLKEDRYCAILIGDTRKSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCKSTPYWERQVEKYNFYMIMHEHLFIF
RKPKKDENLNKIKYSTGLY

Sequences:

>Translated_259_residues
MQDIDFKKEITTVWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRRGIGFDINP
DSVELTKRNLDFDGDYKYEQVVRVGDVRNLKEISDISIDLIITHPPYLNIIKYSNGRIEGDLSNISDVKKFCDELEKGVI
ELYRVLKEDRYCAILIGDTRKSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCKSTPYWERQVEKYNFYMIMHEHLFIF
RKPKKDENLNKIKYSTGLY
>Mature_259_residues
MQDIDFKKEITTVWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSGTTLIETKILNRRGIGFDINP
DSVELTKRNLDFDGDYKYEQVVRVGDVRNLKEISDISIDLIITHPPYLNIIKYSNGRIEGDLSNISDVKKFCDELEKGVI
ELYRVLKEDRYCAILIGDTRKSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCKSTPYWERQVEKYNFYMIMHEHLFIF
RKPKKDENLNKIKYSTGLY

Specific function: Unknown

COG id: COG0863

COG function: function code L; DNA modification methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.72 [C]

Molecular weight: Translated: 30540; Mature: 30540

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDIDFKKEITTVWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSG
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCEEECCCCCCC
TTLIETKILNRRGIGFDINPDSVELTKRNLDFDGDYKYEQVVRVGDVRNLKEISDISIDL
CEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHCCEEEE
IITHPPYLNIIKYSNGRIEGDLSNISDVKKFCDELEKGVIELYRVLKEDRYCAILIGDTR
EEECCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
KSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCKSTPYWERQVEKYNFYMIMHEHLFIF
CCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEEEEEEEE
RKPKKDENLNKIKYSTGLY
ECCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MQDIDFKKEITTVWSFPERGKWKTHKGNYRGNFAPQIPRNVILRYSQEGDFVLDPMVGSG
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCEEECCCCCCC
TTLIETKILNRRGIGFDINPDSVELTKRNLDFDGDYKYEQVVRVGDVRNLKEISDISIDL
CEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHCCEEEE
IITHPPYLNIIKYSNGRIEGDLSNISDVKKFCDELEKGVIELYRVLKEDRYCAILIGDTR
EEECCCCEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
KSGHYIPLSYYVMRLFLKNGFVLKEDIIKVQHNCKSTPYWERQVEKYNFYMIMHEHLFIF
CCCCEECHHHHHHHHHHHCCCEEHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEEEEEEEE
RKPKKDENLNKIKYSTGLY
ECCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; DNA Adenine; DNA [C]

Specific reaction: S-Adenosyl-L-Methionine + DNA Adenine = S-Adenosyl-L-Homocysteine + DNA 6-Methylaminopurine. Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA