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The map label for this gene is ykfC [H]

Identifier: 167039046

GI number: 167039046

Start: 391294

End: 392334

Strand: Reverse

Name: ykfC [H]

Synonym: Teth514_0383

Alternate gene names: 167039046

Gene position: 392334-391294 (Counterclockwise)

Preceding gene: 167039047

Following gene: 167039042

Centisome position: 15.97

GC content: 37.08

Gene sequence:

>1041_bases
ATGGACTCGAAAGATATGCAGAGACTGCAGACAACTCAACAAAGAGGCTATCCGTTGAATAGAGAAATGGAATTTCAAAA
GACAACGGAAGTGCATAGTATATCATCGGCGTCAAAAGATAGAAGAAACGATGTACAAAGATATACCAGCAAGATGCTTG
AAATGATAGTAGAACGAGGAAACATGAGAGCAGCATACAAGCGCGTTGTTGCAAATAAAGGAAGCCATGGAGTCGATGGG
ATGGAAGTAGATGAACTTCTACCGTATCTCAAAGAAAACTGGGCAACCATAAAACAACAACTGCTGGAGGGGAAATACAA
ACCACAACCAGTGCGAAGAGTAGAAATTTCCAAACCAGATGGAGGAGTAAGACTACTAGGAATACCTACAGCACTAGATA
GGCTAATACAACAAGCAATAGCCCAAATACTAAATAGAGTCTACAACCATACATTTTCTGATAGCAGTTATGGATTTAGA
CCAGGACGCAGTGCAAAAGACGCAATAAAAGCCGCAGAAGCATATATAAATGAAGGATATACATGGGTTGTAGATATGGA
CTTAGAAAAGTTCTTTGACAGAGTAAACCACGACATAATAATGTCCAAACTAGAAAAGCGGATAGGAGACAAAAGAGTAC
TAAAGTTAATAAGAAGATACTTAGAATCAGGAGTAATGATAAACGGAATCAAAGTATCAACAGAAGAAGGAACACCCCAA
GGAGGGCCATTAAGTCCCCTATTAGCAAACATAATGTTGGACGAACTAGACAAAGAACTTGAAAAGAGAGGACACAAATT
CTGTCGGTACGCAGATGACTGCAACATATATGTAAAAAGCAGGTCTGCAGGAAACAGAGTAATGAAGAGCATAAAGAAAT
TCATAGAAAGCAAATTAAAATTAAAAATCAATGAAGCAAAAAGTGCTGTAGATAGACCATGGAGAAGAAAATTTCTTGGA
TTTTCATTCTACACAAAAGAAAACGAAGTAAGAATAAGTGTCAATTCTCAAATTAAATCTCCAAAGATTTTCAAATTATA
A

Upstream 100 bases:

>100_bases
GATGTATGGTTGAACCTTGAGAAGTCAGCAGAGGTCATAGTACTTATCTAGTCATGAATAGATAAGGAAGGGCCGAACGT
TAGGAGGTTTTGGAAATCTT

Downstream 100 bases:

>100_bases
TGGCATTTTTTAAGTGCATAAAAGTATTTTTTCTCAAATTATCACAGCCTGATTAAAAATTTTTTTCACTTTTTAAGAGC
ATAACCGCCAAAATATGTTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKINEAKSAVDRPWRRKFLG
FSFYTKENEVRISVNSQIKSPKIFKL

Sequences:

>Translated_346_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKINEAKSAVDRPWRRKFLG
FSFYTKENEVRISVNSQIKSPKIFKL
>Mature_346_residues
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERGNMRAAYKRVVANKGSHGVDG
MEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPDGGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFR
PGRSAKDAIKAAEAYINEGYTWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLKLKINEAKSAVDRPWRRKFLG
FSFYTKENEVRISVNSQIKSPKIFKL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=240, Percent_Identity=31.25, Blast_Score=128, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6226520, Length=205, Percent_Identity=31.7073170731707, Blast_Score=109, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 39918; Mature: 39918

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKINEAKSAVDRPWRRKFLGFSFYTKENEVRISVNSQIKSPKIFKL
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MDSKDMQRLQTTQQRGYPLNREMEFQKTTEVHSISSASKDRRNDVQRYTSKMLEMIVERG
CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NMRAAYKRVVANKGSHGVDGMEVDELLPYLKENWATIKQQLLEGKYKPQPVRRVEISKPD
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
GGVRLLGIPTALDRLIQQAIAQILNRVYNHTFSDSSYGFRPGRSAKDAIKAAEAYINEGY
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
TWVVDMDLEKFFDRVNHDIIMSKLEKRIGDKRVLKLIRRYLESGVMINGIKVSTEEGTPQ
EEEEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC
GGPLSPLLANIMLDELDKELEKRGHKFCRYADDCNIYVKSRSAGNRVMKSIKKFIESKLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHH
LKINEAKSAVDRPWRRKFLGFSFYTKENEVRISVNSQIKSPKIFKL
HHHHHHHHHHCCHHHHHHHCCEEEECCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]