BacMap

Definition	Thermoanaerobacter sp. X514 chromosome, complete genome.
Accession	NC_010320
Length	2,457,259

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The map label for this gene is ytrB [H]

Identifier: 167039035

GI number: 167039035

Start: 380715

End: 381512

Strand: Reverse

Name: ytrB [H]

Synonym: Teth514_0372

Alternate gene names: 167039035

Gene position: 381512-380715 (Counterclockwise)

Preceding gene: 167039036

Following gene: 167039031

Centisome position: 15.53

GC content: 32.58

Gene sequence:

>798_bases
ATGTACACATTAGAAGTAAAGAATCTAAGTAAACAAATTGATGGAAAACAAATACTCTCCAATGTAACTTTTAAAGTAGA
AGAAAGAGAAATAATGGCACTTGTGGGTCCAAACGGTGCAGGAAAAACCACAACATTAAAATGCATAATGAACGCAGTAA
AAAAGGATTCAGGCGAAATATTCATATTCGAAAAGCCTTTTCACCCTTCTATAAAAAAAGATATAGCGTTTGTTACAGAA
CACAGAAAAGTCTTTAACAACTTACAACTGGCAGACTATTACAAACTGTACAAAACTCTGTATCCATCATGGGATGATAT
GTTTTTTAAAAACTTTCTCTCCCGATATGGCTTTAACTTAAATGAAGAGATGCAAAAATTCTCAAGGGGTCAAAAAACCC
TTATATTAGCGATATTAGCTTTTTCAACAAATGCAAAACTCATAATACTGGATGAGCCTACACAGCACCTTGACCCGGCT
GCTAGGTTTGAACTTATAGAAATAATAAAGCAATACGTCAATGAAAAGAAGGGCACTATTTTACTTTCTTCTCATGAAAT
ATTTGAATTAGAAGAATACGCCACAAGTTTTGCCATAATAAAAGATGGAAAAATACTATATACAGATTCCATTGATGAAG
CGAAACAAAAACACAGAATAGTTAGCCTAAATGAAAACATAAAAGGGGCAAAAGTAATCGCAGTAATGAATAACGAAGTT
TTAGTACAAACTGAAGAAGATATAGGTGAATATCCCCGCTTAAATCAAATAATTGTAGGCTACTTAAAAAGTACCTAA

Upstream 100 bases:

>100_bases
GTTTTACTCGGCAGGGAAATTTACCTCTGTCCTTAATATTCTCGTCCCTCATTTGTCTCTTAGGCTTTTGGTCATATGTA
ATAAAAGGCGGTGAAAATTA

Downstream 100 bases:

>100_bases
TAAACAAGGTAACAATAAGAAATTTAAATTGATTTTCCTATAAAACATCTATTTGATTCTCCCCCTCTGAGATGTAAATC
TAGCTCAGAGGGGTATTTTC

Product: ABC transporter-like protein

Products: ADP; phosphate; beta-D-galactose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MYTLEVKNLSKQIDGKQILSNVTFKVEEREIMALVGPNGAGKTTTLKCIMNAVKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFNNLQLADYYKLYKTLYPSWDDMFFKNFLSRYGFNLNEEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
ARFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKST

Sequences:

>Translated_265_residues
MYTLEVKNLSKQIDGKQILSNVTFKVEEREIMALVGPNGAGKTTTLKCIMNAVKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFNNLQLADYYKLYKTLYPSWDDMFFKNFLSRYGFNLNEEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
ARFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKST
>Mature_265_residues
MYTLEVKNLSKQIDGKQILSNVTFKVEEREIMALVGPNGAGKTTTLKCIMNAVKKDSGEIFIFEKPFHPSIKKDIAFVTE
HRKVFNNLQLADYYKLYKTLYPSWDDMFFKNFLSRYGFNLNEEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPA
ARFELIEIIKQYVNEKKGTILLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
LVQTEEDIGEYPRLNQIIVGYLKST

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=28.0952380952381, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=26.2376237623762, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI27881501, Length=270, Percent_Identity=24.4444444444444, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI30795238, Length=270, Percent_Identity=24.4444444444444, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI45446740, Length=204, Percent_Identity=29.9019607843137, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI47078218, Length=204, Percent_Identity=29.9019607843137, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27262624, Length=237, Percent_Identity=25.3164556962025, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI27262626, Length=237, Percent_Identity=25.3164556962025, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=26.027397260274, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI27477115, Length=203, Percent_Identity=25.615763546798, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=24.6445497630332, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31657092, Length=210, Percent_Identity=23.8095238095238, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI150417984, Length=217, Percent_Identity=25.3456221198157, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27881506, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI10947137, Length=193, Percent_Identity=30.0518134715026, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1788472, Length=225, Percent_Identity=30.2222222222222, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789593, Length=241, Percent_Identity=26.1410788381743, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786319, Length=221, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=226, Percent_Identity=25.2212389380531, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=25.2212389380531, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=23.4782608695652, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790739, Length=225, Percent_Identity=20, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788897, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788165, Length=186, Percent_Identity=27.9569892473118, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786253, Length=205, Percent_Identity=23.9024390243902, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787182, Length=209, Percent_Identity=29.1866028708134, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=26.9767441860465, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=24.3119266055046, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789890, Length=218, Percent_Identity=24.3119266055046, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=243, Percent_Identity=23.0452674897119, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=24.8868778280543, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=231, Percent_Identity=25.1082251082251, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI2367384, Length=214, Percent_Identity=25.2336448598131, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=23.6111111111111, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=25.2525252525253, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787112, Length=202, Percent_Identity=24.7524752475248, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=25.3164556962025, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789751, Length=206, Percent_Identity=25.7281553398058, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=24.2990654205607, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787041, Length=200, Percent_Identity=26.5, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788053, Length=168, Percent_Identity=26.1904761904762, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786803, Length=202, Percent_Identity=18.8118811881188, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=209, Percent_Identity=24.4019138755981, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=221, Percent_Identity=25.7918552036199, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=196, Percent_Identity=25, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321121, Length=191, Percent_Identity=26.7015706806283, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666092, Length=260, Percent_Identity=28.4615384615385, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24648314, Length=222, Percent_Identity=27.4774774774775, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=29.7169811320755, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=29.7169811320755, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=25.6038647342995, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=25.6038647342995, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221512771, Length=220, Percent_Identity=26.8181818181818, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=25.5924170616114, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650855, Length=233, Percent_Identity=24.0343347639485, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281362751, Length=233, Percent_Identity=24.0343347639485, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650853, Length=234, Percent_Identity=24.7863247863248, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582014, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582012, Length=222, Percent_Identity=24.3243243243243, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30475; Mature: 30475

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTLEVKNLSKQIDGKQILSNVTFKVEEREIMALVGPNGAGKTTTLKCIMNAVKKDSGEI
CEEEEECHHHHHCCHHHHHHHCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
FIFEKPFHPSIKKDIAFVTEHRKVFNNLQLADYYKLYKTLYPSWDDMFFKNFLSRYGFNL
EEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
NEEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPAARFELIEIIKQYVNEKKGTI
CHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
EEECCCHHHHHHHHHEEEEEECCEEEEECCHHHHHHCCEEEEECCCCCCEEEEEEECCCE
LVQTEEDIGEYPRLNQIIVGYLKST
EEEEHHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MYTLEVKNLSKQIDGKQILSNVTFKVEEREIMALVGPNGAGKTTTLKCIMNAVKKDSGEI
CEEEEECHHHHHCCHHHHHHHCEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCE
FIFEKPFHPSIKKDIAFVTEHRKVFNNLQLADYYKLYKTLYPSWDDMFFKNFLSRYGFNL
EEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
NEEMQKFSRGQKTLILAILAFSTNAKLIILDEPTQHLDPAARFELIEIIKQYVNEKKGTI
CHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCCCEE
LLSSHEIFELEEYATSFAIIKDGKILYTDSIDEAKQKHRIVSLNENIKGAKVIAVMNNEV
EEECCCHHHHHHHHHEEEEEECCEEEEECCHHHHHHCCEEEEECCCCCCEEEEEEECCCE
LVQTEEDIGEYPRLNQIIVGYLKST
EEEEHHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; beta-D-galactose [Periplasm]; H2O [C]

Specific reaction: ATP + beta-D-galactose [Periplasm] + H2O = ADP + phosphate + beta-D-galactose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]