Click here to switch to the map view.

The map label for this gene is xylF [H]

Identifier: 167038825

GI number: 167038825

Start: 153538

End: 154644

Strand: Direct

Name: xylF [H]

Synonym: Teth514_0155

Alternate gene names: 167038825

Gene position: 153538-154644 (Clockwise)

Preceding gene: 167038824

Following gene: 167038826

Centisome position: 6.25

GC content: 34.24

Gene sequence:

>1107_bases
ATGTCATGGAAAATTTCCAGAAAAATTGTTTTACCACTTATAATGGTGTTAATTTTGACATTTGTATTTTCTGGATGTGC
TACTACATCTAACAACCAGCAAAGTACTACTTCTACAACAACTTCTTCAGATAATGCTAAAAATACAGAAACAATCAAAA
TAGGCTTCAGTATGGATAATTTGGCTTTGGAAAGATGGCAAAAGGATAGAGATTTATTTGTAAAAAGAGCGAAAGAATTG
GGAGCAGAAGTTTTAGTGCAATCTGCTAACAGTGATCCACAATTGCAATATTCACAATGCCAAAATTTAATTGCTCAAGG
GATAAAAGTTTTAGTTATACTTCCGACTGATGGTAGTGCTATTGCGCCTATAGTAGAAGAAGCGCATAAAGCAGGTGTAA
AGGTTTTAGCCTATGATAGATTAATAATGAACTCTGATTTAGATTATTATGTATCTTTTGATAATGTTAAAGTTGGAGAA
TTACAAGCAGAAGCAATTACTAAATTAGTACCCAAGGGTAGGTATTTCTTGCTTGAAGGTTCTCCGACAGATAATAATGC
AAAACTATTTTATGAAGGGCAGATGAAAGTATTAAAGCCACTAGTTGACAAGGGGGATATTAAAATTGTAGGAGAACAAT
GGGCTAAAAATTGGGATACCAACGAAGCCTATAAGATTATGCAAAATGCGTTAACAGCTAATAATAATAAAATTGATGCA
GTTGTTGCCGCTAATGACAGTACTGCATTGGGAGCAATCAGAGCTTTAGAAGAACAGAAATTAGCTGGAAAAGTGCCTAT
TTCTGGTCAAGATGCTGACTTAGCAAATTGTCAGTTGATTGTGGAAGGCAAACAAACCATGACTGTATATAAGCCAATCG
TATTAGAAGCTACAAAAGCGGCTGAAATGGCAGTTGCTATGGCGAAAGGAGAAAAAATTGAAACAAATGGAACTGTAAAT
AATGGAAAGATAGATGTACCTTCTGTTTTGGTAACTCCTATTGCAGTTGACAAAAATAATATGTTTGATACGGTTATAAA
GGATGGGTTCCAAAAGTTAGAAGAAGTTTATAAGAATATTCCCAAAGACCAATGGCCTAAACAATAA

Upstream 100 bases:

>100_bases
CAAAAAATAGTTAAAAGGGGGTGTCCAAAAATATCACAAGACAAAATCTTTTACAGCAAAAATATTATAAAAATATATTA
TTTTGAGGAGGAGAATAAGT

Downstream 100 bases:

>100_bases
AAAATTGTAGGGGAATGAAATCATTCCCCTACTTATGCGTGCGCCCGGCATGGGCGATAGCTAGGCGGTGAAAGTCCGCT
GTGGGCTTGGTAGTGGGAAC

Product: D-xylose ABC transporter, periplasmic substrate-binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MSWKISRKIVLPLIMVLILTFVFSGCATTSNNQQSTTSTTTSSDNAKNTETIKIGFSMDNLALERWQKDRDLFVKRAKEL
GAEVLVQSANSDPQLQYSQCQNLIAQGIKVLVILPTDGSAIAPIVEEAHKAGVKVLAYDRLIMNSDLDYYVSFDNVKVGE
LQAEAITKLVPKGRYFLLEGSPTDNNAKLFYEGQMKVLKPLVDKGDIKIVGEQWAKNWDTNEAYKIMQNALTANNNKIDA
VVAANDSTALGAIRALEEQKLAGKVPISGQDADLANCQLIVEGKQTMTVYKPIVLEATKAAEMAVAMAKGEKIETNGTVN
NGKIDVPSVLVTPIAVDKNNMFDTVIKDGFQKLEEVYKNIPKDQWPKQ

Sequences:

>Translated_368_residues
MSWKISRKIVLPLIMVLILTFVFSGCATTSNNQQSTTSTTTSSDNAKNTETIKIGFSMDNLALERWQKDRDLFVKRAKEL
GAEVLVQSANSDPQLQYSQCQNLIAQGIKVLVILPTDGSAIAPIVEEAHKAGVKVLAYDRLIMNSDLDYYVSFDNVKVGE
LQAEAITKLVPKGRYFLLEGSPTDNNAKLFYEGQMKVLKPLVDKGDIKIVGEQWAKNWDTNEAYKIMQNALTANNNKIDA
VVAANDSTALGAIRALEEQKLAGKVPISGQDADLANCQLIVEGKQTMTVYKPIVLEATKAAEMAVAMAKGEKIETNGTVN
NGKIDVPSVLVTPIAVDKNNMFDTVIKDGFQKLEEVYKNIPKDQWPKQ
>Mature_367_residues
SWKISRKIVLPLIMVLILTFVFSGCATTSNNQQSTTSTTTSSDNAKNTETIKIGFSMDNLALERWQKDRDLFVKRAKELG
AEVLVQSANSDPQLQYSQCQNLIAQGIKVLVILPTDGSAIAPIVEEAHKAGVKVLAYDRLIMNSDLDYYVSFDNVKVGEL
QAEAITKLVPKGRYFLLEGSPTDNNAKLFYEGQMKVLKPLVDKGDIKIVGEQWAKNWDTNEAYKIMQNALTANNNKIDAV
VAANDSTALGAIRALEEQKLAGKVPISGQDADLANCQLIVEGKQTMTVYKPIVLEATKAAEMAVAMAKGEKIETNGTVNN
GKIDVPSVLVTPIAVDKNNMFDTVIKDGFQKLEEVYKNIPKDQWPKQ

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=311, Percent_Identity=60.4501607717042, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI1790192, Length=279, Percent_Identity=29.0322580645161, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788473, Length=281, Percent_Identity=31.3167259786477, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40461; Mature: 40330

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWKISRKIVLPLIMVLILTFVFSGCATTSNNQQSTTSTTTSSDNAKNTETIKIGFSMDN
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
LALERWQKDRDLFVKRAKELGAEVLVQSANSDPQLQYSQCQNLIAQGIKVLVILPTDGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCC
IAPIVEEAHKAGVKVLAYDRLIMNSDLDYYVSFDNVKVGELQAEAITKLVPKGRYFLLEG
HHHHHHHHHHCCCEEEEEEHEEECCCCCEEEEECCEEECHHHHHHHHHHCCCCCEEEEEC
SPTDNNAKLFYEGQMKVLKPLVDKGDIKIVGEQWAKNWDTNEAYKIMQNALTANNNKIDA
CCCCCCCEEEECCCHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
VVAANDSTALGAIRALEEQKLAGKVPISGQDADLANCQLIVEGKQTMTVYKPIVLEATKA
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECHHEEEHHHH
AEMAVAMAKGEKIETNGTVNNGKIDVPSVLVTPIAVDKNNMFDTVIKDGFQKLEEVYKNI
HHHHHHHHCCCEEECCCCCCCCEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
PKDQWPKQ
CCCCCCCC
>Mature Secondary Structure 
SWKISRKIVLPLIMVLILTFVFSGCATTSNNQQSTTSTTTSSDNAKNTETIKIGFSMDN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
LALERWQKDRDLFVKRAKELGAEVLVQSANSDPQLQYSQCQNLIAQGIKVLVILPTDGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCEEEEEEECCCCC
IAPIVEEAHKAGVKVLAYDRLIMNSDLDYYVSFDNVKVGELQAEAITKLVPKGRYFLLEG
HHHHHHHHHHCCCEEEEEEHEEECCCCCEEEEECCEEECHHHHHHHHHHCCCCCEEEEEC
SPTDNNAKLFYEGQMKVLKPLVDKGDIKIVGEQWAKNWDTNEAYKIMQNALTANNNKIDA
CCCCCCCEEEECCCHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCEEEE
VVAANDSTALGAIRALEEQKLAGKVPISGQDADLANCQLIVEGKQTMTVYKPIVLEATKA
EEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEECHHEEEHHHH
AEMAVAMAKGEKIETNGTVNNGKIDVPSVLVTPIAVDKNNMFDTVIKDGFQKLEEVYKNI
HHHHHHHHCCCEEECCCCCCCCEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHC
PKDQWPKQ
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]