Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 167038718

GI number: 167038718

Start: 49389

End: 50282

Strand: Reverse

Name: rbcR [H]

Synonym: Teth514_0044

Alternate gene names: 167038718

Gene position: 50282-49389 (Counterclockwise)

Preceding gene: 167038732

Following gene: 167038717

Centisome position: 2.05

GC content: 29.75

Gene sequence:

>894_bases
ATGAATATCAACAATTTGAGAGCTTTCTACAAAACAGTTTATTATAAAAGCATTTCATCTTCTGCAAAAGAATTGTATTT
ATCTCAGCCTGCTATAAGTCAGCAAATAAAAACTCTTGAAAAGGATTTAAAAACTACTCTTTTAAAGAGAAGCAATAGAG
GTGTAATTCCAACACCGGCAGGAGAATTAGTTTATCAATATGCAGAACGAATTTTAAATTTATATGACAATATGCTCCAA
GACCTACAGTGTTGTGAAAATGACTGTGTAAACAGACTCACAATATCTTGCTGCCCTACCATCGGCCAATATGCTTTGCC
CTGCACTCTTCACGAATTTAAAAAGAAAAATAAAAATATTACACTTCACGTAGAGCACAATTTTAGCAATGAAGTAATCC
ATCACATAAAAGAAGGAGGCATTGATATAGGATTTATTGAAGGCTGTTATACTGATGAAAATATAAATTGCATTCCTCTA
GGAGAATTTAAAATGCATTTTGTCGCTAGTGGCAATTGGGAGCTAAAAAACTTGCCAAAAAATAAATTATTCTATTACCA
CTTTTTTATCATTCATAAAAACTGTGCATTGCGAAAAATAATTGAAGAGACATTTCTTAAATACGGCATTGACATAAACA
AATTAAAAATTGAAATAGAGTCACCTTCTATCGAATCAATAAAATCTTTAGTTGCTGCAGGACATGGTTTATCTATTTTG
CCTTATATTTCTATAAAAAAAGAGTTGTATACTAAAACCCTCACTATTATAGAAGTAGATAACATCGAGTTTAATTACAC
CTATTCACTTATATATAACAAAAAGATTCGTAAAAAAATTAAGTCTGATTTTATTGATTTTATCAAAAACTCAGGCAAAA
AATTCTTCTGTTAA

Upstream 100 bases:

>100_bases
TTTCATTTATATCAAATTTGTAGTATAATTAAATTAAACGTTGTATTAAGTCATGTCTTTAACAATATCCGATAAATTTT
TGTCAAAAAGGAGGAGGCGT

Downstream 100 bases:

>100_bases
GGTGATAAAGCATGATTTGGGAACTTATAAGTTTTGGAGAAATTTGTCCACTACCTCTTTTGAAGGCCATTGAAAAATAT
AAAAAAATGGAAAAAGGTGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNINNLRAFYKTVYYKSISSSAKELYLSQPAISQQIKTLEKDLKTTLLKRSNRGVIPTPAGELVYQYAERILNLYDNMLQ
DLQCCENDCVNRLTISCCPTIGQYALPCTLHEFKKKNKNITLHVEHNFSNEVIHHIKEGGIDIGFIEGCYTDENINCIPL
GEFKMHFVASGNWELKNLPKNKLFYYHFFIIHKNCALRKIIEETFLKYGIDINKLKIEIESPSIESIKSLVAAGHGLSIL
PYISIKKELYTKTLTIIEVDNIEFNYTYSLIYNKKIRKKIKSDFIDFIKNSGKKFFC

Sequences:

>Translated_297_residues
MNINNLRAFYKTVYYKSISSSAKELYLSQPAISQQIKTLEKDLKTTLLKRSNRGVIPTPAGELVYQYAERILNLYDNMLQ
DLQCCENDCVNRLTISCCPTIGQYALPCTLHEFKKKNKNITLHVEHNFSNEVIHHIKEGGIDIGFIEGCYTDENINCIPL
GEFKMHFVASGNWELKNLPKNKLFYYHFFIIHKNCALRKIIEETFLKYGIDINKLKIEIESPSIESIKSLVAAGHGLSIL
PYISIKKELYTKTLTIIEVDNIEFNYTYSLIYNKKIRKKIKSDFIDFIKNSGKKFFC
>Mature_297_residues
MNINNLRAFYKTVYYKSISSSAKELYLSQPAISQQIKTLEKDLKTTLLKRSNRGVIPTPAGELVYQYAERILNLYDNMLQ
DLQCCENDCVNRLTISCCPTIGQYALPCTLHEFKKKNKNITLHVEHNFSNEVIHHIKEGGIDIGFIEGCYTDENINCIPL
GEFKMHFVASGNWELKNLPKNKLFYYHFFIIHKNCALRKIIEETFLKYGIDINKLKIEIESPSIESIKSLVAAGHGLSIL
PYISIKKELYTKTLTIIEVDNIEFNYTYSLIYNKKIRKKIKSDFIDFIKNSGKKFFC

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=23.7903225806452, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=22.0216606498195, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788481, Length=278, Percent_Identity=24.1007194244604, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=156, Percent_Identity=25.6410256410256, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI145693105, Length=266, Percent_Identity=24.0601503759398, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=198, Percent_Identity=24.2424242424242, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=23.5294117647059, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789506, Length=295, Percent_Identity=24.0677966101695, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=27.9527559055118, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=22.5296442687747, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=169, Percent_Identity=24.8520710059172, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=24, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34410; Mature: 34410

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNINNLRAFYKTVYYKSISSSAKELYLSQPAISQQIKTLEKDLKTTLLKRSNRGVIPTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GELVYQYAERILNLYDNMLQDLQCCENDCVNRLTISCCPTIGQYALPCTLHEFKKKNKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHCCCCE
TLHVEHNFSNEVIHHIKEGGIDIGFIEGCYTDENINCIPLGEFKMHFVASGNWELKNLPK
EEEEECCCCHHHHHHHHHCCCEEEEEECEEECCCCCEEEECCEEEEEEECCCEEECCCCC
NKLFYYHFFIIHKNCALRKIIEETFLKYGIDINKLKIEIESPSIESIKSLVAAGHGLSIL
CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCEEE
PYISIKKELYTKTLTIIEVDNIEFNYTYSLIYNKKIRKKIKSDFIDFIKNSGKKFFC
EHHHHHHHHHHEEEEEEEECCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNINNLRAFYKTVYYKSISSSAKELYLSQPAISQQIKTLEKDLKTTLLKRSNRGVIPTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GELVYQYAERILNLYDNMLQDLQCCENDCVNRLTISCCPTIGQYALPCTLHEFKKKNKNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHCCCCE
TLHVEHNFSNEVIHHIKEGGIDIGFIEGCYTDENINCIPLGEFKMHFVASGNWELKNLPK
EEEEECCCCHHHHHHHHHCCCEEEEEECEEECCCCCEEEECCEEEEEEECCCEEECCCCC
NKLFYYHFFIIHKNCALRKIIEETFLKYGIDINKLKIEIESPSIESIKSLVAAGHGLSIL
CCEEEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCCEEE
PYISIKKELYTKTLTIIEVDNIEFNYTYSLIYNKKIRKKIKSDFIDFIKNSGKKFFC
EHHHHHHHHHHEEEEEEEECCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]