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The map label for this gene is recF [H]

Identifier: 167038679

GI number: 167038679

Start: 3112

End: 4200

Strand: Direct

Name: recF [H]

Synonym: Teth514_0004

Alternate gene names: 167038679

Gene position: 3112-4200 (Clockwise)

Preceding gene: 167038678

Following gene: 167038680

Centisome position: 0.13

GC content: 27.46

Gene sequence:

>1089_bases
TTGTATGTGAAGGAGCTATTTGTCGACAATTTTAGAAATTTACAAAAGCAAAAAATAGAATTTTGCGAAGGAATAAATAT
ATTTTATGGTTTAAATGCACAAGGAAAGAGCAATTTATTAGAAAGTATTAGGCTTTTAAGTATGGGAAGGTCTTTTAGAG
GGAGCAAAACGACAGAACTAATAAAATTTGGAGAAGATTATTTTTATGTAAAAGCTATAATTTGTCAAGAAAATAACGAT
AAAAAAATAGAATTTGGATACAAGAAAAATGAAAATAAAGTCATTAAAGTAAATGGCAATAAAATAAAGTCGACTTCCGA
ACTTTTAGGTCAACTTTTGACAGTCATTTTTTCTCCTGAAGATTTAAACATAATAAAAGAAGGACCTTCCCATCGCAGAA
AATATCTGGATTCTTGTATATCTGTTGTTGAAAAGAATTATCTTTATAACCTCATGCAATATAACAAAATACTAATGAAT
AGAAATAAACTATTAAAGAGCATAAAAGAAGGGAAAAGTAAAAGTATACTAGAAATTTTTGATGACCAATTAGTAGAATA
CGGGGCAAAAATAATTGTGATGAGACAAAATTATTTAAAAAACGTAGAAATTAATATAAAAAAATTTTTACTTGAAATTT
CCAATGAGACAGCAGAAATTGTCTACCTAAATAGTGTAGGACTTAAAGATGCTTCAGATGAAGAAATAGTTAAAAAAAGA
TTAAAAGAAAAACTATCAAAGAATATAGATGTGGATTTAAGGTATTTTACAACACAAGTTGGGCCTCATAGGGAAGATTT
TAAAATTATTATAAACGGCTATGATTCAAGAGTATATTCTTCTCAAGGTCAACAGCGAACAGCGGCTTTATGCCTTAAAT
TATCAGAGTTTGAAATTTTAAAAAAGGAGACTAGTGAAAAACCAGTACTGCTTTTAGATGACGTAATGTCAGAATTAGAT
GAAAATAGAAAAAAATATGTCCTAGAAAGATTAAAAGGTTTTCAGACTTTTATAACCCATACTACAAAAAGAGATTTAAA
AGGAGATTGTTATTTTAAGATATCTAATGGGGTTGTTATTAAAGAATAG

Upstream 100 bases:

>100_bases
GTAAATGGCGCAATAGAATTAAAAAGAGGTAAAAAACTTCACAAAAATGATATAATTGAGGTAGATGGTAAAACTTATAT
CATAAAGTGAGGAATTTAAC

Downstream 100 bases:

>100_bases
GGGGTCAAAAAATGTATGTCCATTTAGGCGGCAACGTGGTAGTTCCTGACAAAGACATTATAGCTATTTTTGACATGAGT
GTTGTAACTACTTCGGAGGC

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIKFGEDYFYVKAIICQENND
KKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMN
RNKLLKSIKEGKSKSILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR
LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEILKKETSEKPVLLLDDVMSELD
ENRKKYVLERLKGFQTFITHTTKRDLKGDCYFKISNGVVIKE

Sequences:

>Translated_362_residues
MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIKFGEDYFYVKAIICQENND
KKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMN
RNKLLKSIKEGKSKSILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR
LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEILKKETSEKPVLLLDDVMSELD
ENRKKYVLERLKGFQTFITHTTKRDLKGDCYFKISNGVVIKE
>Mature_362_residues
MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIKFGEDYFYVKAIICQENND
KKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMN
RNKLLKSIKEGKSKSILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR
LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEILKKETSEKPVLLLDDVMSELD
ENRKKYVLERLKGFQTFITHTTKRDLKGDCYFKISNGVVIKE

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=340, Percent_Identity=24.4117647058824, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 42142; Mature: 42142

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00617 RECF_1 ; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
IKFGEDYFYVKAIICQENNDKKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPE
HHHCCCEEEEEEEEEECCCCCEEEECEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
DLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKSILEIF
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
DDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR
HHHHHHCCCEEEEEECHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHH
LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEIL
HHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH
KKETSEKPVLLLDDVMSELDENRKKYVLERLKGFQTFITHTTKRDLKGDCYFKISNGVVI
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEE
KE
EC
>Mature Secondary Structure
MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL
CCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHH
IKFGEDYFYVKAIICQENNDKKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPE
HHHCCCEEEEEEEEEECCCCCEEEECEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCC
DLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKSILEIF
CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
DDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR
HHHHHHCCCEEEEEECHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHH
LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEIL
HHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHH
KKETSEKPVLLLDDVMSELDENRKKYVLERLKGFQTFITHTTKRDLKGDCYFKISNGVVI
HHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCEEE
KE
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA