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The map label for this gene is xylR [H]

Identifier: 163845506

GI number: 163845506

Start: 1384436

End: 1385542

Strand: Reverse

Name: xylR [H]

Synonym: BSUIS_B1420

Alternate gene names: 163845506

Gene position: 1385542-1384436 (Counterclockwise)

Preceding gene: 163845507

Following gene: 163845505

Centisome position: 98.91

GC content: 60.52

Gene sequence:

>1107_bases
ATGGTGTTGAAAATCCTGCGTGACGAGGGGCCGCAATCGCGGGCCGAGCTGGCGAGGCGTTGCGGATTGTCGGCCACGAC
CCTCACGCATCTCACGGCGCAACTGCTCAAAGATGGTTGCATTGCCGAAACCGACGCTCCAGTTCTGCCTTCGGGATCAC
CGATGCCGGGCAGGCCTCCAGTCAGTGTGCGTCTGGTTCCCTCGGCTCATTATGTGGCTGGCGTGCATATTGGCGCCGAA
GCTGTGCAGGTGGCGATTTGCGATCTGACGGCGCAACTGGTCACCAGCGCTGCTTTCGATCATGCCGCAAACGATAATCC
GCTGAAACTGACGCATCAGACAGCCGATGTTCTGCGCAATCTCGTGCAGGCCAAAGGCATTTCATTGGGTAGCCTCGTCG
GTATCGGCATGGGGGTGCCAGGACCGGTCGATCAGGTGCGCCGCCGCAATTTGCTGTCAATCAATACCGGCTGGCGCGAT
GTCGCTTTTGCCGATGCAATGGAAGCGGAACTGAATATTCCAACTGTGGTTGAGCATAATGTTACAGCCATGGCGCTTGC
CGAGGCCCATTACGGCATAGGGCAGGGCTGCCCGGCTGTTCTTTATGTCTATCTTGGTACGGGGCTGGGAGCGGGGCTGG
TGGTGGACAGCATGCCGTTTCGCCCCGGCGGTCATGGTGCGGTGGAGCTAGGACATATCCAGATCGATCCGCAAGGTGCG
CTTTGCGCCTGCGGCAATCGCGGCTGTCTGGAGACCTTTGTGTCGGAACGCGTGTTGCGCGAGCGTGGCGCTGGCAGCGC
AGAGCCGCTTCTTGCGGCGCTCGCCCGTAACCCGGCATTGCATGATGAAGTGGCAGGCCACTTTACAACTGCGCTCGCCA
ATGCGGTCAATCTGCTGACACCGGATTTGATCGTGCTCGGGGGGCATTTTGCGGAAGCGCCAGAAGCTTTCTACGCGCGT
TTGCGGTGCGATCTGCCGCCACGGGTGCTGCCGCATATGCGCGATGTCTTGCGGATAGAGCGCGGCGGTTTCGGGAACAA
TGCTGGCGCAGTGGGCGCGGCTGCCGTCGCACTGGACCACCTGTTTTATTCGGGAGTATCCCGATGA

Upstream 100 bases:

>100_bases
TTTATCCGCAGCCTACACAAACGAAAATTGTTGACAGACCTATTTATTTACTAAACCTTAGAAAATAAATAGGGGAAGCC
GCATAAGTATACACCTTGGC

Downstream 100 bases:

>100_bases
ATGCACGCCTGACGGGCCTGGGCCTCAATCTTCTTTCCTTTGCCGTGGGGATCGGTGGCTGGTATCTCCTCACGGCCACG
GGGGCGGTGGTGCTGCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPPVSVRLVPSAHYVAGVHIGAE
AVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRD
VAFADAMEAELNIPTVVEHNVTAMALAEAHYGIGQGCPAVLYVYLGTGLGAGLVVDSMPFRPGGHGAVELGHIQIDPQGA
LCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPALHDEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYAR
LRCDLPPRVLPHMRDVLRIERGGFGNNAGAVGAAAVALDHLFYSGVSR

Sequences:

>Translated_368_residues
MVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPPVSVRLVPSAHYVAGVHIGAE
AVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRD
VAFADAMEAELNIPTVVEHNVTAMALAEAHYGIGQGCPAVLYVYLGTGLGAGLVVDSMPFRPGGHGAVELGHIQIDPQGA
LCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPALHDEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYAR
LRCDLPPRVLPHMRDVLRIERGGFGNNAGAVGAAAVALDHLFYSGVSR
>Mature_368_residues
MVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPPVSVRLVPSAHYVAGVHIGAE
AVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRD
VAFADAMEAELNIPTVVEHNVTAMALAEAHYGIGQGCPAVLYVYLGTGLGAGLVVDSMPFRPGGHGAVELGHIQIDPQGA
LCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPALHDEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYAR
LRCDLPPRVLPHMRDVLRIERGGFGNNAGAVGAAAVALDHLFYSGVSR

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1787878, Length=378, Percent_Identity=25.6613756613757, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786891, Length=375, Percent_Identity=26.1333333333333, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790522, Length=237, Percent_Identity=32.4894514767932, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787363, Length=307, Percent_Identity=25.7328990228013, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI87081733, Length=257, Percent_Identity=25.2918287937743, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 38491; Mature: 38491

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPP
CEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VSVRLVPSAHYVAGVHIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRN
EEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
LVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRDVAFADAMEAELNIPTVVEHN
HHHHCCCCHHHHHHCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEECCC
VTAMALAEAHYGIGQGCPAVLYVYLGTGLGAGLVVDSMPFRPGGHGAVELGHIQIDPQGA
CHHEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCC
LCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPALHDEVAGHFTTALANAVNLLT
EEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDVLRIERGGFGNNAGAVGAAAVALDH
CCEEEECCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LFYSGVSR
HHHHCCCC
>Mature Secondary Structure
MVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRPP
CEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VSVRLVPSAHYVAGVHIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLRN
EEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHH
LVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSINTGWRDVAFADAMEAELNIPTVVEHN
HHHHCCCCHHHHHHCCCCCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEECCC
VTAMALAEAHYGIGQGCPAVLYVYLGTGLGAGLVVDSMPFRPGGHGAVELGHIQIDPQGA
CHHEEHHHHHCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCC
LCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPALHDEVAGHFTTALANAVNLLT
EEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDVLRIERGGFGNNAGAVGAAAVALDH
CCEEEECCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LFYSGVSR
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]