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The map label for this gene is xylH [H]

Identifier: 163845051

GI number: 163845051

Start: 909837

End: 911027

Strand: Reverse

Name: xylH [H]

Synonym: BSUIS_B0928

Alternate gene names: 163845051

Gene position: 911027-909837 (Counterclockwise)

Preceding gene: 163845052

Following gene: 163845044

Centisome position: 65.03

GC content: 57.09

Gene sequence:

>1191_bases
ATGAGCGAGAATGTAATCCAGAGCGGCCAGCAGAGCAGCGTGGGGCGCTATCTCAAGAACAATCTGCGTGAATCCGGGAT
GCTGCTTTCGCTCGTTGCAATCATGATCTTCTTCCAGATCGTGACCGGCGGCGTTCTCATGAAGCCGCTGAACCTCACCA
ATCTCGTTTTGCAGAACAGCTATATCGTCATCATGGCGCTTGGAATGCTGCTCATCATCGTCACGGGCCATATCGATCTT
TCGGTCGGTTCGGTCTGCGGCTTTATCGGGGCGCTCGCTGCCGTCATGATGGTAAAGCTCGGCATTCCCTTTCCCATTGC
GGCCATTCTCTGCCTCATTGTCGGCGGGTTGATCGGCGCGATCCAGGGTTTTTGGGTCGCCTATTTCAATATCCCCTCCT
TCATTGTGACATTGGCCGGTATGCTCGTGTTCAAGGGGCTGATGCTTGCCGTTCTGGGCGGACAGTCGGTCGGACCTTTT
CCGGTCGTGTTCCAGAAGCTCTCGTCGGGCTTCATTCCAGAGGTGATCGGCACGTTTGACGGCGTTTATCTCACCTCGCT
CATCATCGGCGTTCTGCTTGCGGTTTTCCTCATCTGGCAGAGCATGCGGTCGCGCGCGCGCCATATTGCCTATGAGGTGG
AGACCGAGCCCTTCGGCCTTTTCGTGGTCAAGTGCATCCTCTATTTCGTCGCAATTGCCTATCTTTCGCTGCTCATTTCC
TCACATCGCGGTATGCCGAACGTACTCATCATCATGGCGGTGCTGATTGCCGCCTATGCGTTTCTCACCAATCGCACCGT
GATCGGCCGCCAGATCTATGCGGTGGGCGGCAATCGTCACGCCGCCAAGCTTTCCGGCGTGAAAACCGAGCGGCTGACGT
TTCTCACCTTCGTCAATATGGGTGTGCTGGCAGCACTTGCGGGTCTCGTCTTCGCCGCCCGTCTCAATACGGCGACGCCG
AAAGCTGGCATCGGCTTTGAACTGGACGTCATCGCGGCCTGCTTCATCGGTGGCGCTTCGGCCTATGGCGGTGTGGGGCG
GGTTACGGGTGCCGTGATCGGCGCGCTCATCATGGGCGTGATGAACAACGGCATGTCGATCCTCGGCATCGGTATCGACT
ATCAGCAGGTCATCAAGGGTATCGTGCTGCTGGGGGCGGTTTGTATCGACGTCTATAACCAGAAACGCTGA

Upstream 100 bases:

>100_bases
TCGTCATGCATGAGGGCGCCTTCGTCGGCGAAGTGGCAGGCGAGGAAGCAACGCAGGAAAACATCATGCGCGCCATCATG
CGAAACAAGGGAAAAGGGTA

Downstream 100 bases:

>100_bases
TATTTCGGCTTACCATAACCAAGTCTCAGAGCGGTTCCGGTTAAAACGGAACCGCTCTAACGATTTGTTTTGTCGCATTA
TCCTACGCGACGCTTATCCC

Product: hypothetical protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSENVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDL
SVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPF
PVVFQKLSSGFIPEVIGTFDGVYLTSLIIGVLLAVFLIWQSMRSRARHIAYEVETEPFGLFVVKCILYFVAIAYLSLLIS
SHRGMPNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALAGLVFAARLNTATP
KAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR

Sequences:

>Translated_396_residues
MSENVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDL
SVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPF
PVVFQKLSSGFIPEVIGTFDGVYLTSLIIGVLLAVFLIWQSMRSRARHIAYEVETEPFGLFVVKCILYFVAIAYLSLLIS
SHRGMPNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALAGLVFAARLNTATP
KAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR
>Mature_395_residues
SENVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFQIVTGGVLMKPLNLTNLVLQNSYIVIMALGMLLIIVTGHIDLS
VGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGAIQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFP
VVFQKLSSGFIPEVIGTFDGVYLTSLIIGVLLAVFLIWQSMRSRARHIAYEVETEPFGLFVVKCILYFVAIAYLSLLISS
HRGMPNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNMGVLAALAGLVFAARLNTATPK
AGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=377, Percent_Identity=39.2572944297082, Blast_Score=244, Evalue=9e-66,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=43.7908496732026, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693152, Length=163, Percent_Identity=37.4233128834356, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1790524, Length=164, Percent_Identity=40.2439024390244, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI1788896, Length=153, Percent_Identity=39.2156862745098, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787793, Length=137, Percent_Identity=37.956204379562, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082395, Length=103, Percent_Identity=41.747572815534, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788471, Length=135, Percent_Identity=40.7407407407407, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42007; Mature: 41876

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SENVIQSGQQSSVGRYLKNNLRESGMLLSLVAIMIFFQIVTGGVLMKPLNLTNLVLQNS
CCCHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHCC
YIVIMALGMLLIIVTGHIDLSVGSVCGFIGALAAVMMVKLGIPFPIAAILCLIVGGLIGA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IQGFWVAYFNIPSFIVTLAGMLVFKGLMLAVLGGQSVGPFPVVFQKLSSGFIPEVIGTFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHH
GVYLTSLIIGVLLAVFLIWQSMRSRARHIAYEVETEPFGLFVVKCILYFVAIAYLSLLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
SHRGMPNVLIIMAVLIAAYAFLTNRTVIGRQIYAVGGNRHAAKLSGVKTERLTFLTFVNM
HCCCCCHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHH
GVLAALAGLVFAARLNTATPKAGIGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHH
MNNGMSILGIGIDYQQVIKGIVLLGAVCIDVYNQKR
HHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]