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The map label for this gene is rhaS [C]

Identifier: 163844777

GI number: 163844777

Start: 609959

End: 610918

Strand: Reverse

Name: rhaS [C]

Synonym: BSUIS_B0624

Alternate gene names: 163844777

Gene position: 610918-609959 (Counterclockwise)

Preceding gene: 163844778

Following gene: 163844773

Centisome position: 43.61

GC content: 51.98

Gene sequence:

>960_bases
TTGGGCTCATTGCATCCAAGATTCATTTTAGCTCTTATCGGATCGAGGATATTAATGAGTTTAATTGCGGAAAATCAGAC
TGTTATGGGCATTAGATCACTAGGGGAAAGAGGTCTCGGCACGGTTACGGGCCATCGTGGCGTCAGGCACGTAAAAGGAC
CATTTCAGTACGGAGTGACTGGAGATAATGTGGATATCTCCGCGCAGGAGTGCGCTTTTGCGATCATTTTGCTGGATGCT
GTTCGCAATCTCAAGTGGAACGCAGGCCGCGGGGAAGACGTCATAGCGAGCTATCCAGCGGGTAACGCGTTTGTTATCCC
GCCGCACGAAACGATCCAGTTTTCATGGCCACTGCCGGTTGAATATATATATTTTCCCGTTTCCAATCGGAACAAGGCTT
CCCATGCCAGCGAAGAGGGTGCCACGGGAGCTGACGCGATTCCGTCAAAAATCATCAGATTTTCAAGCAAACAATGCCTC
CAGGTCAGCCAGATCCTCTGGGAGGAATTGCAGAGTGAGAATTCCGAAGACCATTTTTTACAGGCACTGCATTTGGTCCT
GACGAATGTAGTGATCCGCAATGCAGTCATGGCTTACGATACTGGCGGTGTGCAGCCGGGGCTGAGCCCTTATGCCTGCC
GGCAGATTGAAGCCTATCTTCAAGAAAATTTCAGGGGGCCGGTATCCGTGCCGGATATGGCGGCGATGCTGGGGATATCG
GCGGGGCATTTTGCAACCTGTTTTCGCGAAAGTTTTGGCCAGACGCCGCACCGCTACCTTTTGAAATTACGGCTGGACGA
GGCCGAGCGGTGTTTGCGTGAAACTGATATGCCTATCAGCGAAATTGCAGCTCGCCTGAACTTTTCGAGCCAAAGCCACC
TGACGACCGCGCTTCGCAAATATCGGCGCTTGACGCCGGGTAAGATTCGGCAGGCTGGCGCTTCTAAAAGCCGATATTGA

Upstream 100 bases:

>100_bases
CCAATCTTATCTATTTGTGTAATCTTTCTGTGGGGCGAGTCCGGTTTGTGCCGCTACACACTTATATAAATCTGCGGGGC
TGAGAAAGCCTTGGCGCAAG

Downstream 100 bases:

>100_bases
CTGATCGTTATCGACTGAAGCGAAGGTGGCGCCGATATATTGGGCTTGGCTACGGCTTCTGGTGAATTGGCTGACAGGTT
ACGATAATGAACGCCGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; Transcriptional Regulator AraC Family Protein; Transcription Regulator AraC Family; Proline Utilization Regulator; Transcriptional Regulator AraC; Transcriptional Regulator AraC-Type; Transcriptional Regulator HTH AraC Type; AraC Family Regulatory Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator Arac Family; Transcriptional Regulator Protein AraC Family; AraC-Type Trancriptional Regulator

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MGSLHPRFILALIGSRILMSLIAENQTVMGIRSLGERGLGTVTGHRGVRHVKGPFQYGVTGDNVDISAQECAFAIILLDA
VRNLKWNAGRGEDVIASYPAGNAFVIPPHETIQFSWPLPVEYIYFPVSNRNKASHASEEGATGADAIPSKIIRFSSKQCL
QVSQILWEELQSENSEDHFLQALHLVLTNVVIRNAVMAYDTGGVQPGLSPYACRQIEAYLQENFRGPVSVPDMAAMLGIS
AGHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMPISEIAARLNFSSQSHLTTALRKYRRLTPGKIRQAGASKSRY

Sequences:

>Translated_319_residues
MGSLHPRFILALIGSRILMSLIAENQTVMGIRSLGERGLGTVTGHRGVRHVKGPFQYGVTGDNVDISAQECAFAIILLDA
VRNLKWNAGRGEDVIASYPAGNAFVIPPHETIQFSWPLPVEYIYFPVSNRNKASHASEEGATGADAIPSKIIRFSSKQCL
QVSQILWEELQSENSEDHFLQALHLVLTNVVIRNAVMAYDTGGVQPGLSPYACRQIEAYLQENFRGPVSVPDMAAMLGIS
AGHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMPISEIAARLNFSSQSHLTTALRKYRRLTPGKIRQAGASKSRY
>Mature_318_residues
GSLHPRFILALIGSRILMSLIAENQTVMGIRSLGERGLGTVTGHRGVRHVKGPFQYGVTGDNVDISAQECAFAIILLDAV
RNLKWNAGRGEDVIASYPAGNAFVIPPHETIQFSWPLPVEYIYFPVSNRNKASHASEEGATGADAIPSKIIRFSSKQCLQ
VSQILWEELQSENSEDHFLQALHLVLTNVVIRNAVMAYDTGGVQPGLSPYACRQIEAYLQENFRGPVSVPDMAAMLGISA
GHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMPISEIAARLNFSSQSHLTTALRKYRRLTPGKIRQAGASKSRY

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35285; Mature: 35154

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLHPRFILALIGSRILMSLIAENQTVMGIRSLGERGLGTVTGHRGVRHVKGPFQYGVT
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHCCCCCEECCC
GDNVDISAQECAFAIILLDAVRNLKWNAGRGEDVIASYPAGNAFVIPPHETIQFSWPLPV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCCE
EYIYFPVSNRNKASHASEEGATGADAIPSKIIRFSSKQCLQVSQILWEELQSENSEDHFL
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
QALHLVLTNVVIRNAVMAYDTGGVQPGLSPYACRQIEAYLQENFRGPVSVPDMAAMLGIS
HHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
AGHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMPISEIAARLNFSSQSHLTTALRK
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
YRRLTPGKIRQAGASKSRY
HHCCCCHHHHHCCCCCCCC
>Mature Secondary Structure 
GSLHPRFILALIGSRILMSLIAENQTVMGIRSLGERGLGTVTGHRGVRHVKGPFQYGVT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHCCCCCEECCC
GDNVDISAQECAFAIILLDAVRNLKWNAGRGEDVIASYPAGNAFVIPPHETIQFSWPLPV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCCE
EYIYFPVSNRNKASHASEEGATGADAIPSKIIRFSSKQCLQVSQILWEELQSENSEDHFL
EEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH
QALHLVLTNVVIRNAVMAYDTGGVQPGLSPYACRQIEAYLQENFRGPVSVPDMAAMLGIS
HHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
AGHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMPISEIAARLNFSSQSHLTTALRK
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
YRRLTPGKIRQAGASKSRY
HHCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA