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The map label for this gene is ygbM [H]

Identifier: 163844340

GI number: 163844340

Start: 139288

End: 140073

Strand: Reverse

Name: ygbM [H]

Synonym: BSUIS_B0151

Alternate gene names: 163844340

Gene position: 140073-139288 (Counterclockwise)

Preceding gene: 163844341

Following gene: 163844339

Centisome position: 10.0

GC content: 55.73

Gene sequence:

>786_bases
ATGCCGCGTTTTGCTGCCAATCTGTCGACGATGTTTAACGAGGTGCCATTCCTCGAACGTTTTAGACTGGCTGCCGAAGC
AGGTTTTGGCGGCGTCGAGTTTCTGTTTCCTTATGACTTCGACGCTGATGTCATTGCCAGGGAATTGAAGCAGCACAATC
TCACGCAGGTTCTTTTCAACATGCCTCCCGGCGATTGGGCTGCGGGCGAACGCGGCATGGCAGCTATTCCGGGTCGCGAA
CAGGAATTCCGCGACAATGTCGATATCGCCCTGCATTATGCATTGGCGCTGGATTGCAGGACGCTTCACGCCATGTCCGG
CATCACGGAAGGGCTGGACGGGAAAGCCTGCGAGGCAACCTTTATCGAAAACTTCCGCTATGCGGCAGACAAGCTTGCTC
CGCACGGCATCACGGTGCTGGTCGAGCCCCTCAATACGCGCAATATGCCCGGCTATTTCATCGTGCATCAACTGGAAGCC
GTTGGCCTCGTAAAGAGGGTCAACCGCCCCAATGTCGCCGTGCAGCTCGATCTCTATCATGCCCAGATCATGGATGGCGA
CCTGACCCGCCTGATCGAGAAAATGAACGGTGCATTCAGCCATGTTCAAATTGCATCCGTTCCCGACCGGCATGAGCCGG
ATGAAGGCGAATTGAACTATCCATATCTTTTCTCGGTCCTGGAGAGTGTCGGCTATCGGGGATGGGTGGGATGCGAATAT
AATCCGCGGGGCAAAACGGAAAGCGGCCTCGCCTGGTTTGCCCCATACCGGGATCAAAGCGCATGA

Upstream 100 bases:

>100_bases
TCGGAAAACCATTATCGCTTGCACTGAAATCCGGAAATTTCGGCACTGAGGCTTTCTTCTTTGAAGCCCAAAAGATTGCC
AATCAGGAAGGAGATAAATA

Downstream 100 bases:

>100_bases
TACCGGCTGAACGGCAGGCTCTGATTGTCAGCCGCCTTTCGGCGCGCGGCATCTTGAGCATTGCGGAACTGGCCGAAATG
CTGGGCGTATCGCCAATGAC

Product: hypothetical protein

Products: 2-hydroxy-3-oxopropanoate

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MPRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAIPGRE
QEFRDNVDIALHYALALDCRTLHAMSGITEGLDGKACEATFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEA
VGLVKRVNRPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEY
NPRGKTESGLAWFAPYRDQSA

Sequences:

>Translated_261_residues
MPRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAIPGRE
QEFRDNVDIALHYALALDCRTLHAMSGITEGLDGKACEATFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEA
VGLVKRVNRPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEY
NPRGKTESGLAWFAPYRDQSA
>Mature_260_residues
PRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAIPGREQ
EFRDNVDIALHYALALDCRTLHAMSGITEGLDGKACEATFIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAV
GLVKRVNRPNVAVQLDLYHAQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEYN
PRGKTESGLAWFAPYRDQSA

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=265, Percent_Identity=45.2830188679245, Blast_Score=214, Evalue=5e-56,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=44.4444444444444, Blast_Score=187, Evalue=1e-47,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=54.6511627906977, Blast_Score=300, Evalue=9e-83,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=47.2868217054264, Blast_Score=253, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=34.5833333333333, Blast_Score=169, Evalue=2e-42,
Organism=Drosophila melanogaster, GI17530883, Length=256, Percent_Identity=34.375, Blast_Score=168, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.3.1.22

Molecular weight: Translated: 29258; Mature: 29126

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFN
CCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHEEE
MPPGDWAAGERGMAAIPGREQEFRDNVDIALHYALALDCRTLHAMSGITEGLDGKACEAT
CCCCCCCCCCCCCEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHH
FIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYH
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEEEEE
AQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEY
EECCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCC
NPRGKTESGLAWFAPYRDQSA
CCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
PRFAANLSTMFNEVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFN
CCHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCHHHHEEE
MPPGDWAAGERGMAAIPGREQEFRDNVDIALHYALALDCRTLHAMSGITEGLDGKACEAT
CCCCCCCCCCCCCEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHH
FIENFRYAADKLAPHGITVLVEPLNTRNMPGYFIVHQLEAVGLVKRVNRPNVAVQLDLYH
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEEEEEE
AQIMDGDLTRLIEKMNGAFSHVQIASVPDRHEPDEGELNYPYLFSVLESVGYRGWVGCEY
EECCCCHHHHHHHHHCCCHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCC
NPRGKTESGLAWFAPYRDQSA
CCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: hydroxypyruvate

Specific reaction: hydroxypyruvate = 2-hydroxy-3-oxopropanoate; Other Name(s): hydroxypyruvate ketol-isomerase

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]