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The map label for this gene is fliN [H]

Identifier: 163844318

GI number: 163844318

Start: 122043

End: 122363

Strand: Reverse

Name: fliN [H]

Synonym: BSUIS_B0129

Alternate gene names: 163844318

Gene position: 122363-122043 (Counterclockwise)

Preceding gene: 163844319

Following gene: 163844317

Centisome position: 8.73

GC content: 58.26

Gene sequence:

>321_bases
ATGCAGCAGGAACTGAACGAAGCCATTGAGGAACTGCGCGAGGAAAAGCCACGCAGCGCGCAAAAAAGTGCTTCCAAGCC
CAATCTTGATCTCATCATGGGCATTCCGGTGGATGTGCAGGTGGTTCTCGGCGGCACGACCATGCCGGTTTCCAGCCTGA
TGAAGCTGGGACTCGGTGCCGTCATCACGCTCGACAAGCAGATCGGCGATCCGGTCGATATCGTGGTCAACGGGCGGGTG
ATCGCGCGCGGTGAAGTGATCGTTCTGGAAGACGATTCCCCGCGGTTCGGCGTCAGCCTCACCGAAATCATCGGCAAGTA
A

Upstream 100 bases:

>100_bases
CAGACAAGAACGCGCTGCCCGTTTTCGTGCGCCGCGCGGTCAAGAAGGCAACCGTTGAACTGGCGGGACAGGCATGAGCG
CGGAAACCAAGGATAGGAAC

Downstream 100 bases:

>100_bases
CAGGCGCATTCCGCACATGAGCGACACCGAGCAGCACATCCTCGCCGAAACCGGCGCCGCCGGGCCGGGCAACAGTATTG
TCGACACCCTGACCGGCCCG

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSPRFGVSLTEIIGK

Sequences:

>Translated_106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSPRFGVSLTEIIGK
>Mature_106_residues
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGAVITLDKQIGDPVDIVVNGRV
IARGEVIVLEDDSPRFGVSLTEIIGK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=109, Percent_Identity=38.5321100917431, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 11378; Mature: 11378

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGA
CCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCE
VITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSPRFGVSLTEIIGK
EEEECCCCCCCEEEEECCEEEECCCEEEEECCCCCCCCCHHHHHCC
>Mature Secondary Structure
MQQELNEAIEELREEKPRSAQKSASKPNLDLIMGIPVDVQVVLGGTTMPVSSLMKLGLGA
CCHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCEEEEEECCCCCCHHHHHHCCCCE
VITLDKQIGDPVDIVVNGRVIARGEVIVLEDDSPRFGVSLTEIIGK
EEEECCCCCCCEEEEECCEEEECCCEEEEECCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9858749; 11481430 [H]