Click here to switch to the map view.

The map label for this gene is lytT [H]

Identifier: 162448256

GI number: 162448256

Start: 1483778

End: 1484521

Strand: Direct

Name: lytT [H]

Synonym: ACL_1421

Alternate gene names: 162448256

Gene position: 1483778-1484521 (Clockwise)

Preceding gene: 162448223

Following gene: 162448257

Centisome position: 99.12

GC content: 28.63

Gene sequence:

>744_bases
ATGGGGGATGCCATGATTTCTATAGCTATATGTGATAATGAACAAGTATTTCTAGATTATTACCAATCAAAACTTGAATC
TGTTGCAAGAAAACTTAAGATTGATTTAGATATTCACCGCTTTTCTAGCGGTGAAGCTTTACTGTTTCATTTAGACGATT
ATCCTAACCAATTTCAAATTATCTATTTAGATATTGTAATGGGTGGTATTAACGGTATTGAAACTGCTTTAAAGGTTCGT
AAATTAAACAGTGTTGTTAAAATCATATTCTTAACTTCTTCTACAGACTATGTCTTTAATGCATTTGATGCAAATGCATC
TCATTACTTAATTAAAGATTTACACGATGATAAGTTTGATGATGTCTTCGCTCATGTATACAATCAAGTCAAAGCCAATA
TCAGTGAACCTTTATTTTCTATTACAACTCAACAAGAAAATTATTTAATTCCTTTCAGTGAGATTGCTTATTTTGAAAGT
TTTAAACGTTTAGTGATTTGTCATAAATCAAACAAAGAACGCATAGAGTATTATTATAAGATTAGTGACTTAGTAACAGA
ACTTGAAGATAAACCTTTTATTCTGATTCACCGTTCATTTTTAGTAAATATGCAATATATTTTAAAACTTTCTAAGACAG
ATGTTTATTTAAAAAATGGTGTTGTGCTTCCTGTTTCTAGAAACAATTATGAAGAAGTCAAAGATAAACTGTTTAACTAT
AACAACCAAAATCGTTTGAAGTGA

Upstream 100 bases:

>100_bases
CTTCAACGCGTATTTGATAGATACTCATTTTTTAATTCCTTCCTTTTTTATAATTTTTAATTCTTTTAATTATAGTATAA
TTATTATACGAACCACATCT

Downstream 100 bases:

>100_bases
GGGTAGATTATCATGGATATACTTTATATTAGTTTTGCTATTTTAATATCAACCATATTTTCTTACTTTTATATTCGAAT
TTATTCGAAATATTTTGTCT

Product: LuxR family two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MGDAMISIAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQIIYLDIVMGGINGIETALKVR
KLNSVVKIIFLTSSTDYVFNAFDANASHYLIKDLHDDKFDDVFAHVYNQVKANISEPLFSITTQQENYLIPFSEIAYFES
FKRLVICHKSNKERIEYYYKISDLVTELEDKPFILIHRSFLVNMQYILKLSKTDVYLKNGVVLPVSRNNYEEVKDKLFNY
NNQNRLK

Sequences:

>Translated_247_residues
MGDAMISIAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQIIYLDIVMGGINGIETALKVR
KLNSVVKIIFLTSSTDYVFNAFDANASHYLIKDLHDDKFDDVFAHVYNQVKANISEPLFSITTQQENYLIPFSEIAYFES
FKRLVICHKSNKERIEYYYKISDLVTELEDKPFILIHRSFLVNMQYILKLSKTDVYLKNGVVLPVSRNNYEEVKDKLFNY
NNQNRLK
>Mature_246_residues
GDAMISIAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQIIYLDIVMGGINGIETALKVRK
LNSVVKIIFLTSSTDYVFNAFDANASHYLIKDLHDDKFDDVFAHVYNQVKANISEPLFSITTQQENYLIPFSEIAYFESF
KRLVICHKSNKERIEYYYKISDLVTELEDKPFILIHRSFLVNMQYILKLSKTDVYLKNGVVLPVSRNNYEEVKDKLFNYN
NQNRLK

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28903; Mature: 28772

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDAMISIAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQI
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCEEE
IYLDIVMGGINGIETALKVRKLNSVVKIIFLTSSTDYVFNAFDANASHYLIKDLHDDKFD
EEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHH
DVFAHVYNQVKANISEPLFSITTQQENYLIPFSEIAYFESFKRLVICHKSNKERIEYYYK
HHHHHHHHHHHHCCCCCCEEEEECCCCEEECHHHHHHHHHHCEEEEEECCCCCHHHEEEE
ISDLVTELEDKPFILIHRSFLVNMQYILKLSKTDVYLKNGVVLPVSRNNYEEVKDKLFNY
HHHHHHHHCCCCEEEEEHHHHHHHHHHEEECCCCEEEECCEEEEECCCCHHHHHHHHHCC
NNQNRLK
CCCCCCC
>Mature Secondary Structure 
GDAMISIAICDNEQVFLDYYQSKLESVARKLKIDLDIHRFSSGEALLFHLDDYPNQFQI
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCEEEEEECCCCCCEEE
IYLDIVMGGINGIETALKVRKLNSVVKIIFLTSSTDYVFNAFDANASHYLIKDLHDDKFD
EEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHH
DVFAHVYNQVKANISEPLFSITTQQENYLIPFSEIAYFESFKRLVICHKSNKERIEYYYK
HHHHHHHHHHHHCCCCCCEEEEECCCCEEECHHHHHHHHHHCEEEEEECCCCCHHHEEEE
ISDLVTELEDKPFILIHRSFLVNMQYILKLSKTDVYLKNGVVLPVSRNNYEEVKDKLFNY
HHHHHHHHCCCCEEEEEHHHHHHHHHHEEECCCCEEEECCEEEEECCCCHHHHHHHHHCC
NNQNRLK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]