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The map label for this gene is ymfN [H]

Identifier: 162447469

GI number: 162447469

Start: 638975

End: 640612

Strand: Direct

Name: ymfN [H]

Synonym: ACL_0608

Alternate gene names: 162447469

Gene position: 638975-640612 (Clockwise)

Preceding gene: 162447468

Following gene: 162447470

Centisome position: 42.68

GC content: 32.6

Gene sequence:

>1638_bases
ATGAATTACTTAATTAAATATTATGACGAGATTCAAAAAGGAAATATCATTGTTGGTAAAGAATTACTAACAGTTCTAGA
AACGCTAATTCAAGATATGGATAATCATAGATATACGTTTGATGAAAAGCCAGGAAATATTCGAATTGAGTTTATCGAAA
CATTTTGTAAGCATACGAAAAGTCCATTTAATGGTGAACCATTCATTTTAGAACTATGGGAAAAAGCAATTCTACAAGCT
GCTTATGGATTCAAAATTGCTGATACCAATCTCAGGAGGTTTAATGAAGTAATTCTACTTATTGCTAGAAAGAATGGTAA
GACTACATTCATTGCAGGTATTGATTTAGCAGAGTTTTTCTTATCTAAGGGTGGTGTTGATATTGTATGTGCTTCAAACA
CATCGGAGCAGGCTAATATATTGTTTGATGAAATCAACAACATGAGAGAAGGTTCAAAAGCATTATCAAATGAAAAAAGA
AGTAAAAAGAATATTTTTCATATTTATTCACCAAAGTCAAAAAACAAGATAAAGAAACTATCCGCACAATCACGAAACAA
AGATGGTTACAACATTGAAGTTGGTTGTATCGATGAAGTACATGAAATGACTGATTCTAAGGTTTATGATGCGATCAAGC
AAAGTCAATCGACCAAAGAAGAACCACTTATTTTTATCATTACAACTGAAGGTAATACAGTGGGTGGTTTCTTAGATAGC
AAACTTGATTATGTTAGAAAGATGATCAAAGGGGAGATTAACGATGAACGTGTGCTTCCTTGGTTATACACTCAAGATTC
AATTAATGAAATCTATGAAGATAAGAGCACATGGCAGAAAAGTAATCCAAGTTTAGGTACTGTAAAAACATATTCATATC
TTGAAGACTTAATGAATAAATCCAGACATGACTTAGCAACACGAGTTACGATGCTTTGTAAAGACTTCAACATTAAGCAA
TTAGAACAAGGATCATGGTTAACTTATAATGATCTAAATAACGAATCAACCTATGATATCAATGAGTTAAGAAACAGTTA
TGCTATAGGCGGTGTTGACTTGTCATCAACAACAGACCTTACGGTTGCACTCTTACTTCTAATTAAAAATGGAAAGAAGT
ATGTTATCCCACAGTTCTTTATGCCAAGTGAAGTTATAAAGCGCAGAAAGGAAGAGGATAACGTTCCCTATGACATTTGG
GTTCAACGAGGTTTAATCACTGTTACAGAAGGTAATCAAAATGACTTCACACTTGTTACACAGTGGTTTCTAATGATGAT
TAGGACATATGAGATTAGACCTCTATGGGTAGGTTATGATCCGTGGAATAGTCAGTACTGGACTAAAGAAATGGAAGACT
TAGGGTTTGAAATGGAAAAGGTCAGACAAGGAATATACTCTTTATCAGAACCTATGAAACAACTTGAAGCGGATCTTAAA
AATGGTAATGTAATCTATAATAATAATCCAATCATGAAATGGAACTTGTCTAATACTCAAGCAAAGATTGATATCAATGG
AAATATTCAGCCATCAAAACTTGGAAGCAAGTATAAAAGAATTGATGGAGCTGTAGCACTTATTATTGCTTATGCAGTGC
TTAATAGATATAAGTTAGAATATGAAAATATGTTATAA

Upstream 100 bases:

>100_bases
ATTCATATGGAACTGTAATAAAAACACTCAACTCAATAATGGGTAAAAATATAATCGATGAAGATGATGAATTTGACAAG
TTTATAGGTAGAATGTCTGA

Downstream 100 bases:

>100_bases
TTTTATAGGGTGATTTAATGAGCAAAGTATTTGATGATGTAGTCAAGTTGAAAGTCTATGAAAAAAACATTAATCAATAT
GATTCTATTATCGATAACTT

Product: bacteriophage terminase-like protein, large subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MNYLIKYYDEIQKGNIIVGKELLTVLETLIQDMDNHRYTFDEKPGNIRIEFIETFCKHTKSPFNGEPFILELWEKAILQA
AYGFKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFFLSKGGVDIVCASNTSEQANILFDEINNMREGSKALSNEKR
SKKNIFHIYSPKSKNKIKKLSAQSRNKDGYNIEVGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNTVGGFLDS
KLDYVRKMIKGEINDERVLPWLYTQDSINEIYEDKSTWQKSNPSLGTVKTYSYLEDLMNKSRHDLATRVTMLCKDFNIKQ
LEQGSWLTYNDLNNESTYDINELRNSYAIGGVDLSSTTDLTVALLLLIKNGKKYVIPQFFMPSEVIKRRKEEDNVPYDIW
VQRGLITVTEGNQNDFTLVTQWFLMMIRTYEIRPLWVGYDPWNSQYWTKEMEDLGFEMEKVRQGIYSLSEPMKQLEADLK
NGNVIYNNNPIMKWNLSNTQAKIDINGNIQPSKLGSKYKRIDGAVALIIAYAVLNRYKLEYENML

Sequences:

>Translated_545_residues
MNYLIKYYDEIQKGNIIVGKELLTVLETLIQDMDNHRYTFDEKPGNIRIEFIETFCKHTKSPFNGEPFILELWEKAILQA
AYGFKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFFLSKGGVDIVCASNTSEQANILFDEINNMREGSKALSNEKR
SKKNIFHIYSPKSKNKIKKLSAQSRNKDGYNIEVGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNTVGGFLDS
KLDYVRKMIKGEINDERVLPWLYTQDSINEIYEDKSTWQKSNPSLGTVKTYSYLEDLMNKSRHDLATRVTMLCKDFNIKQ
LEQGSWLTYNDLNNESTYDINELRNSYAIGGVDLSSTTDLTVALLLLIKNGKKYVIPQFFMPSEVIKRRKEEDNVPYDIW
VQRGLITVTEGNQNDFTLVTQWFLMMIRTYEIRPLWVGYDPWNSQYWTKEMEDLGFEMEKVRQGIYSLSEPMKQLEADLK
NGNVIYNNNPIMKWNLSNTQAKIDINGNIQPSKLGSKYKRIDGAVALIIAYAVLNRYKLEYENML
>Mature_545_residues
MNYLIKYYDEIQKGNIIVGKELLTVLETLIQDMDNHRYTFDEKPGNIRIEFIETFCKHTKSPFNGEPFILELWEKAILQA
AYGFKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFFLSKGGVDIVCASNTSEQANILFDEINNMREGSKALSNEKR
SKKNIFHIYSPKSKNKIKKLSAQSRNKDGYNIEVGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNTVGGFLDS
KLDYVRKMIKGEINDERVLPWLYTQDSINEIYEDKSTWQKSNPSLGTVKTYSYLEDLMNKSRHDLATRVTMLCKDFNIKQ
LEQGSWLTYNDLNNESTYDINELRNSYAIGGVDLSSTTDLTVALLLLIKNGKKYVIPQFFMPSEVIKRRKEEDNVPYDIW
VQRGLITVTEGNQNDFTLVTQWFLMMIRTYEIRPLWVGYDPWNSQYWTKEMEDLGFEMEKVRQGIYSLSEPMKQLEADLK
NGNVIYNNNPIMKWNLSNTQAKIDINGNIQPSKLGSKYKRIDGAVALIIAYAVLNRYKLEYENML

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 63081; Mature: 63081

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYLIKYYDEIQKGNIIVGKELLTVLETLIQDMDNHRYTFDEKPGNIRIEFIETFCKHTK
CCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHCC
SPFNGEPFILELWEKAILQAAYGFKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFF
CCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHCEEEEEEEECCCCEEEEECCHHHHHH
LSKGGVDIVCASNTSEQANILFDEINNMREGSKALSNEKRSKKNIFHIYSPKSKNKIKKL
HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
SAQSRNKDGYNIEVGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNTVGGFLDS
HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHH
KLDYVRKMIKGEINDERVLPWLYTQDSINEIYEDKSTWQKSNPSLGTVKTYSYLEDLMNK
HHHHHHHHHCCCCCCCEECCEEECHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHH
SRHDLATRVTMLCKDFNIKQLEQGSWLTYNDLNNESTYDINELRNSYAIGGVDLSSTTDL
HHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCEEHHHHHCHHEECCCCCCCCHHH
TVALLLLIKNGKKYVIPQFFMPSEVIKRRKEEDNVPYDIWVQRGLITVTEGNQNDFTLVT
HHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCHHHHH
QWFLMMIRTYEIRPLWVGYDPWNSQYWTKEMEDLGFEMEKVRQGIYSLSEPMKQLEADLK
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGNVIYNNNPIMKWNLSNTQAKIDINGNIQPSKLGSKYKRIDGAVALIIAYAVLNRYKLE
CCCEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YENML
HHCCC
>Mature Secondary Structure
MNYLIKYYDEIQKGNIIVGKELLTVLETLIQDMDNHRYTFDEKPGNIRIEFIETFCKHTK
CCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEHHHHHHHHHCC
SPFNGEPFILELWEKAILQAAYGFKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFF
CCCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHCEEEEEEEECCCCEEEEECCHHHHHH
LSKGGVDIVCASNTSEQANILFDEINNMREGSKALSNEKRSKKNIFHIYSPKSKNKIKKL
HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH
SAQSRNKDGYNIEVGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNTVGGFLDS
HHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHH
KLDYVRKMIKGEINDERVLPWLYTQDSINEIYEDKSTWQKSNPSLGTVKTYSYLEDLMNK
HHHHHHHHHCCCCCCCEECCEEECHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHH
SRHDLATRVTMLCKDFNIKQLEQGSWLTYNDLNNESTYDINELRNSYAIGGVDLSSTTDL
HHHHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCEEHHHHHCHHEECCCCCCCCHHH
TVALLLLIKNGKKYVIPQFFMPSEVIKRRKEEDNVPYDIWVQRGLITVTEGNQNDFTLVT
HHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCCHHHHH
QWFLMMIRTYEIRPLWVGYDPWNSQYWTKEMEDLGFEMEKVRQGIYSLSEPMKQLEADLK
HHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
NGNVIYNNNPIMKWNLSNTQAKIDINGNIQPSKLGSKYKRIDGAVALIIAYAVLNRYKLE
CCCEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YENML
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]