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The map label for this gene is xerD [H]

Identifier: 162447445

GI number: 162447445

Start: 617959

End: 618891

Strand: Direct

Name: xerD [H]

Synonym: ACL_0584

Alternate gene names: 162447445

Gene position: 617959-618891 (Clockwise)

Preceding gene: 162447444

Following gene: 162447446

Centisome position: 41.28

GC content: 36.33

Gene sequence:

>933_bases
ATGTCATCAAAAGAAGGGTTTAGACAGCTTACAAAAAAGTATCTAGATGATGCCGACGTAAGTTTGACGACTAAGCAATC
CTATGAAAGGATCCTTCAGCAATTTGTCGAATATGCCAACACACTGTCTGATTTACCAACTCGCAGTGACATTATGGCTT
ATCGGGATCATCTTTTTAAACGCAAGCTAGAAGAAACGACCATTAAGTATCACCTGGTAGTGGTACGAAATTTCTACCGT
TGGTATCACACAAACGGTCATGGAGCAAATCCATCGGAGGGGATTAAAAGTCCAAAGATTGAAAAGAAGTTTAAACGTGC
GCATTTGTCTGAAAGTGAATCCAGACAGTTATTAAAACTGGCTCAAATCAATTCAGATAAAAATATCATTAAATACAGAG
ATTATGTTATGGTTTTACTTATGCTAACAACTGGTATGCGAACTGTTGAAGTAGAACGTGCAGATGTTAGTGATTTAAAT
GTGATTGATGACGGTGAAATACTCTATGTTCATGGAAAAGGCAAAACATCGAAGAGTTCATTCGTTCGTCTCTCACCTTT
AGTGAATAAAGCAATTGAAACATACATCATGAAAAGAAGCGACCAGTATGAACCATTATTTATTGACCATAAACCTAAGT
ATTTAGGCCAAAGAATGAAAACCAGAAACATTAGACGTATTATCAAGGATCTACTTAGAGATATCGGATTTGATGATGAT
AAACACACAGCACATAGTTTAAGACATACAACTGCAACATTGGCAAGACAATATGGAGCAAACAAGGATGACACTCAAAA
GATTATGCGTCATTCAGATCCTGCAACAACAGAGATTTATATGCATGCGGAAATCAAAAGTCAGCATGTTTATGAACATG
TTATTGCACAAAAGCTGCTCAATCAAGAAGAAGATGAAGACAAGAAAAACTGA

Upstream 100 bases:

>100_bases
CATCAAGAAATACAAAAAAATTAGATGGTAGTATAAACGCCATTTATCTTGTTTTTCAAAAAAACATAGAATCAAAAATT
TGATACAGAAAGGTGAAAAG

Downstream 100 bases:

>100_bases
AAAAGAAATGAAAGGATAAATTATGATCAAAGAGTTTCACAACAACCGGTATGGGAAAGTTCGAACAGCGATTATTGATG
ATCAACCCTGTTTTAACTTG

Product: tyrosine recombinase/integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSSKEGFRQLTKKYLDDADVSLTTKQSYERILQQFVEYANTLSDLPTRSDIMAYRDHLFKRKLEETTIKYHLVVVRNFYR
WYHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKLAQINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLN
VIDDGEILYVHGKGKTSKSSFVRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDD
KHTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLNQEEDEDKKN

Sequences:

>Translated_310_residues
MSSKEGFRQLTKKYLDDADVSLTTKQSYERILQQFVEYANTLSDLPTRSDIMAYRDHLFKRKLEETTIKYHLVVVRNFYR
WYHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKLAQINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLN
VIDDGEILYVHGKGKTSKSSFVRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDD
KHTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLNQEEDEDKKN
>Mature_309_residues
SSKEGFRQLTKKYLDDADVSLTTKQSYERILQQFVEYANTLSDLPTRSDIMAYRDHLFKRKLEETTIKYHLVVVRNFYRW
YHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKLAQINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNV
IDDGEILYVHGKGKTSKSSFVRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDDK
HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLLNQEEDEDKKN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=276, Percent_Identity=24.6376811594203, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=25.9515570934256, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36339; Mature: 36208

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKEGFRQLTKKYLDDADVSLTTKQSYERILQQFVEYANTLSDLPTRSDIMAYRDHLFK
CCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RKLEETTIKYHLVVVRNFYRWYHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
AQINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSS
HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCEEEEECCCCCCCCH
FVRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDD
HEEHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KHTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLL
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
NQEEDEDKKN
CCCCCCCCCC
>Mature Secondary Structure 
SSKEGFRQLTKKYLDDADVSLTTKQSYERILQQFVEYANTLSDLPTRSDIMAYRDHLFK
CCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
RKLEETTIKYHLVVVRNFYRWYHTNGHGANPSEGIKSPKIEKKFKRAHLSESESRQLLKL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
AQINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSS
HHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCEEEEECCCCCCCCH
FVRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDD
HEEHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KHTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHAEIKSQHVYEHVIAQKLL
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
NQEEDEDKKN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]