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The map label for this gene is rpoE [C]

Identifier: 162447257

GI number: 162447257

Start: 411715

End: 412263

Strand: Direct

Name: rpoE [C]

Synonym: ACL_0392

Alternate gene names: 162447257

Gene position: 411715-412263 (Clockwise)

Preceding gene: 162447256

Following gene: 162447258

Centisome position: 27.5

GC content: 29.51

Gene sequence:

>549_bases
ATGGACTTAGATTGTATATTAAGTGCGAGGAGAGTTATGGATCAAATACATGAGATCATAGAAGAGTTAAGGCAAAAAGA
CTATAAATCATTTGATACATTCTACAACTTGACAAAGAATCAGGTTTTTTACGCAATCATAAATATTGTTAAAGATAAAG
ATCTGGCTCACGATATAATGCAAGATACATATATTAAATTTCTTGAAAAGATTGACCAATATAAGTCAGGTGCCAATCCA
TACGCATACATCTCAATGATAGGTAGAAATCTAGCGATTAATACTTATAATAGGCAAAAAAGATTAATTAAGTCAGATGA
GCTATTAGAGTCTATTCCTGCAGATAAAGAAGTAGAAAATGATGAAGATATATTTAAGATCCTGAATTTACTAAATGATG
ATGAGAAAGAAGTTGTAACACTTCACGTCATTAATGATTTAAAATTTAAAGAAATAGCAAAAATTATGGAAAAACCACTA
GGTACTGTCTTATGGATTTACAATAAGGCAATAAAGAAACTAAAGGATAAGGTAGGTGATGTCTTATGA

Upstream 100 bases:

>100_bases
AACATATAACAGAGGTAACTAGTTCATGTTCAACCATGAAGTAGGTATCGCTGTTTTTTTATACAAAAATACATGATAAA
ATAAATTATACCAATAAAAC

Downstream 100 bases:

>100_bases
AGAAAAATGAAGTAATCAATTTAATCAAAACTAAAGCCCAAGAAGTAGAGATTAAGGATTTAACTTCCAATATCTTAGAA
CGCGTTAAAAATATTTCTTA

Product: ECF subfamily RNA polymerase sigma-70 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF Family Sigma Factor H; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; DNA-Directed RNA Polymerase Subunit Sigma; RNA Polymerase

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MDLDCILSARRVMDQIHEIIEELRQKDYKSFDTFYNLTKNQVFYAIINIVKDKDLAHDIMQDTYIKFLEKIDQYKSGANP
YAYISMIGRNLAINTYNRQKRLIKSDELLESIPADKEVENDEDIFKILNLLNDDEKEVVTLHVINDLKFKEIAKIMEKPL
GTVLWIYNKAIKKLKDKVGDVL

Sequences:

>Translated_182_residues
MDLDCILSARRVMDQIHEIIEELRQKDYKSFDTFYNLTKNQVFYAIINIVKDKDLAHDIMQDTYIKFLEKIDQYKSGANP
YAYISMIGRNLAINTYNRQKRLIKSDELLESIPADKEVENDEDIFKILNLLNDDEKEVVTLHVINDLKFKEIAKIMEKPL
GTVLWIYNKAIKKLKDKVGDVL
>Mature_182_residues
MDLDCILSARRVMDQIHEIIEELRQKDYKSFDTFYNLTKNQVFYAIINIVKDKDLAHDIMQDTYIKFLEKIDQYKSGANP
YAYISMIGRNLAINTYNRQKRLIKSDELLESIPADKEVENDEDIFKILNLLNDDEKEVVTLHVINDLKFKEIAKIMEKPL
GTVLWIYNKAIKKLKDKVGDVL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788926, Length=185, Percent_Identity=25.4054054054054, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21406; Mature: 21406

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDCILSARRVMDQIHEIIEELRQKDYKSFDTFYNLTKNQVFYAIINIVKDKDLAHDIM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDTYIKFLEKIDQYKSGANPYAYISMIGRNLAINTYNRQKRLIKSDELLESIPADKEVEN
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHEECCHHHHHHHHHHHHHHHHCCCCCCCCC
DEDIFKILNLLNDDEKEVVTLHVINDLKFKEIAKIMEKPLGTVLWIYNKAIKKLKDKVGD
HHHHHHHHHHHCCCCHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VL
CC
>Mature Secondary Structure
MDLDCILSARRVMDQIHEIIEELRQKDYKSFDTFYNLTKNQVFYAIINIVKDKDLAHDIM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QDTYIKFLEKIDQYKSGANPYAYISMIGRNLAINTYNRQKRLIKSDELLESIPADKEVEN
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHEECCHHHHHHHHHHHHHHHHCCCCCCCCC
DEDIFKILNLLNDDEKEVVTLHVINDLKFKEIAKIMEKPLGTVLWIYNKAIKKLKDKVGD
HHHHHHHHHHHCCCCHHEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA