Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 162447226

GI number: 162447226

Start: 379405

End: 380058

Strand: Direct

Name: radC [C]

Synonym: ACL_0360

Alternate gene names: 162447226

Gene position: 379405-380058 (Clockwise)

Preceding gene: 162447225

Following gene: 162447227

Centisome position: 25.34

GC content: 31.35

Gene sequence:

>654_bases
ATGAAACCAAGAGAAAAATTAATTCAACATGGCGTTCGTGCATTAGAAGACTATGAACTTATAGCTATTTTACTTAGAAC
AGGAAATACAAAGGAAGATGTTTTGTTACTTGCTAAAAAAGTGTTGTCTCAATTAGATAATTTTGAAGATATGTTACATA
TCACCGTAGAAGATTTACTTACAATTTATGGAATTAGTGATGCAAAAGCTACCACCATTATTGCTGCAGTAGAACTTGGA
AGAAGATTAAGTGATAGAAAAAAACCAGTACGTAAAATGATAACTGAGTCGAGTGAGGTGTATCATTTACTTAAAGAGGA
TATGTCTTACCTAAGAAAAGAACACTTAATCGTTTTATGTTTAGATATCAAAGGTAATCTACTAAAAAATGAGACGATCT
ATATGGGTACAACTTCATCTATTCAAGTATCTGTAAAAGATTTGTTTAAGTCTGCTGTAAGAATTGGTGCATTTGGCATT
ATTGTCGTCCATAATCACCCAAGCGGTGATTCCACACCTAGTCAAGCAGATGATAAACTAACGAAACTTATTAAAAATGC
TGGTGAAGTTTTATCCATTGAACTTATTGATCATATTATTATAGGTAGAAATGAGTTTTTTTCATATCGTAGACAAAGAA
GAGAAGAAATTTGA

Upstream 100 bases:

>100_bases
AGAAAAGATACATGGACTGAACTTATTAAGATATTTAGAATTTAAATAAAAGTAAAATACACCTCTTCTACCTACTATAA
GTTAGAAGGGGTGTTTATTT

Downstream 100 bases:

>100_bases
TATAATAAATAAAAAAGGTAAAAACCATATGAAGAAAAACTCTAATAAAAAATTCTGGTATTTTGTAGGTATAGGTACAC
TACTTATTATACTTATGATG

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLLTIYGISDAKATTIIAAVELG
RRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLCLDIKGNLLKNETIYMGTTSSIQVSVKDLFKSAVRIGAFGI
IVVHNHPSGDSTPSQADDKLTKLIKNAGEVLSIELIDHIIIGRNEFFSYRRQRREEI

Sequences:

>Translated_217_residues
MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLLTIYGISDAKATTIIAAVELG
RRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLCLDIKGNLLKNETIYMGTTSSIQVSVKDLFKSAVRIGAFGI
IVVHNHPSGDSTPSQADDKLTKLIKNAGEVLSIELIDHIIIGRNEFFSYRRQRREEI
>Mature_217_residues
MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLLTIYGISDAKATTIIAAVELG
RRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLCLDIKGNLLKNETIYMGTTSSIQVSVKDLFKSAVRIGAFGI
IVVHNHPSGDSTPSQADDKLTKLIKNAGEVLSIELIDHIIIGRNEFFSYRRQRREEI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=209, Percent_Identity=30.622009569378, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788997, Length=116, Percent_Identity=34.4827586206897, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367100, Length=116, Percent_Identity=34.4827586206897, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=34.9514563106796, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24668; Mature: 24668

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
TIYGISDAKATTIIAAVELGRRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLC
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEEE
LDIKGNLLKNETIYMGTTSSIQVSVKDLFKSAVRIGAFGIIVVHNHPSGDSTPSQADDKL
EECCCCEECCCEEEEECCCHHEEEHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHH
TKLIKNAGEVLSIELIDHIIIGRNEFFSYRRQRREEI
HHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKPREKLIQHGVRALEDYELIAILLRTGNTKEDVLLLAKKVLSQLDNFEDMLHITVEDLL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
TIYGISDAKATTIIAAVELGRRLSDRKKPVRKMITESSEVYHLLKEDMSYLRKEHLIVLC
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEEE
LDIKGNLLKNETIYMGTTSSIQVSVKDLFKSAVRIGAFGIIVVHNHPSGDSTPSQADDKL
EECCCCEECCCEEEEECCCHHEEEHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHH
TKLIKNAGEVLSIELIDHIIIGRNEFFSYRRQRREEI
HHHHHCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA