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The map label for this gene is cspC [H]

Identifier: 162447160

GI number: 162447160

Start: 303406

End: 303603

Strand: Direct

Name: cspC [H]

Synonym: ACL_0293

Alternate gene names: 162447160

Gene position: 303406-303603 (Clockwise)

Preceding gene: 162447159

Following gene: 162447161

Centisome position: 20.27

GC content: 38.89

Gene sequence:

>198_bases
ATGAAAGGTACTGTTAAATGGTTCGATGCAGGTAAAGGCTACGGCTTTATCACTGCAGACAACGGTAAAGATGTATTTGT
TCACTATTCAGCTATTCAAACTGATGGTTACAAATCTTTAGCTGAAGGCGACCAAGTAGAATTCGAAATTAAGTCAGGCG
ATCGTGGAGATCAAGCGGCTAACGTTTCTAAAATATAA

Upstream 100 bases:

>100_bases
AATTTAATTATGTTTTTAGGTTGTGTTATCAAAAATTAAAGTGTATAATGATTCTAGGTTTGAGAAAACCAAGAGATCTA
AAGAAGGAGTATTGCATTTA

Downstream 100 bases:

>100_bases
TTCGCTTAGGTAAATGTAAGAGGTTTAGAAATAAACCTCTTTTTTTTATGTTTATTTTTGGTATAATCAATTGTAAGGGG
CGATGCGAGAATGAAGCTAG

Product: DNA-binding cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MKGTVKWFDAGKGYGFITADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGDQAANVSKI

Sequences:

>Translated_65_residues
MKGTVKWFDAGKGYGFITADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGDQAANVSKI
>Mature_65_residues
MKGTVKWFDAGKGYGFITADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGDQAANVSKI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=65.0793650793651, Blast_Score=88, Evalue=8e-20,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=63.6363636363636, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=56.0606060606061, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=60.3174603174603, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=53.968253968254, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=46.1538461538462, Blast_Score=71, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=50, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7063; Mature: 7063

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGTVKWFDAGKGYGFITADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGDQAA
CCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC
NVSKI
CCCCC
>Mature Secondary Structure
MKGTVKWFDAGKGYGFITADNGKDVFVHYSAIQTDGYKSLAEGDQVEFEIKSGDRGDQAA
CCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC
NVSKI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]