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The map label for this gene is ytcP [H]

Identifier: 162447142

GI number: 162447142

Start: 282388

End: 283251

Strand: Direct

Name: ytcP [H]

Synonym: ACL_0273

Alternate gene names: 162447142

Gene position: 282388-283251 (Clockwise)

Preceding gene: 162447141

Following gene: 162447143

Centisome position: 18.86

GC content: 34.72

Gene sequence:

>864_bases
ATGATGAAAAGAAAAATCAAGAAGAAAAAAAGACTCAACCGTTCTATAGGTGGAGACATTGCGTTATTCATTTTACTAGC
ATTGTTTGGTATTTTCTCAGCTTATCCATTAATTATGACTGCATCTAATGCATTCAAACCACTAGATGAGTTGTTTGTTT
TCCCACCAACATTATTACCAAGAAACTTAACATTCAATAACTTTAGAGACTTATCTGAATTAATTGGAAACTCTTGGATA
CCATTCTCTAGATACTTCTTTAATACAATATTTGTAACAGTAGTCGGTACAGCAGGACACGTACTAATCGCTAGTATGTG
TGCTTACCCACTTGCTAAATACAAATTTCCAGGATCAAAGATTATATTCATGTTAGTAGTGTACTCATTAATGTTTGCAC
CTCAAGTTACTGCTACACCAAACTATATTATCGTATCTTGGGTTGGTTTAATTGATACACCATGGGCAATTATTTTCCCT
GCAATCGCTTCTTCACTAGGTTTATACTTAATGAAGCAATTTATGGAACAAGTGCCTACGGAGTTAATTGAGTCAGCTAA
AATCGATGGTGCAAGTGAATATCGTATATTTTTCCAAATTGTTATGCCACTGGTAAAACCAGCATGGTTGACATTAATTA
TTTTACTCTTCCAAAGACTATGGACTACTGATGGTGGTGCATTTATCTTCAGTGAAGAATTGAAACCTCTATCATTTGCA
CTACGTCAAATTGCACAAGGATCTATTGAACGTGCAGGGACAGTTGCAGCAGTAGGGTTTATTATGATGATTGTTCCAGT
TGTGTTCTTTATATTCTCACAATCTAAGATTGTGGAAACATTTAGTACATCTGGTCTGAAATAG

Upstream 100 bases:

>100_bases
TTGCGACTATCCTATTTATAATTATGATTAGTGCCAACTTAATTGTCCAAAAATTCTTAAGAAAGTTGGGTGAATAATTA
TGCAAATCGTAAAAGATTTC

Downstream 100 bases:

>100_bases
GAGGATTATATGAAATTATTTACACTCATATCTCTTTTATTTACATTACCATTAAACTTTTCAATTATAAGATATAACTT
CTCATACTATGGTGATGTAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MMKRKIKKKKRLNRSIGGDIALFILLALFGIFSAYPLIMTASNAFKPLDELFVFPPTLLPRNLTFNNFRDLSELIGNSWI
PFSRYFFNTIFVTVVGTAGHVLIASMCAYPLAKYKFPGSKIIFMLVVYSLMFAPQVTATPNYIIVSWVGLIDTPWAIIFP
AIASSLGLYLMKQFMEQVPTELIESAKIDGASEYRIFFQIVMPLVKPAWLTLIILLFQRLWTTDGGAFIFSEELKPLSFA
LRQIAQGSIERAGTVAAVGFIMMIVPVVFFIFSQSKIVETFSTSGLK

Sequences:

>Translated_287_residues
MMKRKIKKKKRLNRSIGGDIALFILLALFGIFSAYPLIMTASNAFKPLDELFVFPPTLLPRNLTFNNFRDLSELIGNSWI
PFSRYFFNTIFVTVVGTAGHVLIASMCAYPLAKYKFPGSKIIFMLVVYSLMFAPQVTATPNYIIVSWVGLIDTPWAIIFP
AIASSLGLYLMKQFMEQVPTELIESAKIDGASEYRIFFQIVMPLVKPAWLTLIILLFQRLWTTDGGAFIFSEELKPLSFA
LRQIAQGSIERAGTVAAVGFIMMIVPVVFFIFSQSKIVETFSTSGLK
>Mature_287_residues
MMKRKIKKKKRLNRSIGGDIALFILLALFGIFSAYPLIMTASNAFKPLDELFVFPPTLLPRNLTFNNFRDLSELIGNSWI
PFSRYFFNTIFVTVVGTAGHVLIASMCAYPLAKYKFPGSKIIFMLVVYSLMFAPQVTATPNYIIVSWVGLIDTPWAIIFP
AIASSLGLYLMKQFMEQVPTELIESAKIDGASEYRIFFQIVMPLVKPAWLTLIILLFQRLWTTDGGAFIFSEELKPLSFA
LRQIAQGSIERAGTVAAVGFIMMIVPVVFFIFSQSKIVETFSTSGLK

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=218, Percent_Identity=28.4403669724771, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1789860, Length=182, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32249; Mature: 32249

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKRKIKKKKRLNRSIGGDIALFILLALFGIFSAYPLIMTASNAFKPLDELFVFPPTLLP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCC
RNLTFNNFRDLSELIGNSWIPFSRYFFNTIFVTVVGTAGHVLIASMCAYPLAKYKFPGSK
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
IIFMLVVYSLMFAPQVTATPNYIIVSWVGLIDTPWAIIFPAIASSLGLYLMKQFMEQVPT
HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELIESAKIDGASEYRIFFQIVMPLVKPAWLTLIILLFQRLWTTDGGAFIFSEELKPLSFA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH
LRQIAQGSIERAGTVAAVGFIMMIVPVVFFIFSQSKIVETFSTSGLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MMKRKIKKKKRLNRSIGGDIALFILLALFGIFSAYPLIMTASNAFKPLDELFVFPPTLLP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCCCCCCC
RNLTFNNFRDLSELIGNSWIPFSRYFFNTIFVTVVGTAGHVLIASMCAYPLAKYKFPGSK
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
IIFMLVVYSLMFAPQVTATPNYIIVSWVGLIDTPWAIIFPAIASSLGLYLMKQFMEQVPT
HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELIESAKIDGASEYRIFFQIVMPLVKPAWLTLIILLFQRLWTTDGGAFIFSEELKPLSFA
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH
LRQIAQGSIERAGTVAAVGFIMMIVPVVFFIFSQSKIVETFSTSGLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]