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The map label for this gene is rnfE

Identifier: 162446938

GI number: 162446938

Start: 62641

End: 63219

Strand: Direct

Name: rnfE

Synonym: ACL_0052

Alternate gene names: NA

Gene position: 62641-63219 (Clockwise)

Preceding gene: 162446937

Following gene: 162446939

Centisome position: 4.18

GC content: 30.05

Gene sequence:

>579_bases
ATGAATAAAAACAATTTAAAACCATTTATTTTATTAAGCATCTTACCACTTATCTATTTAGCAAATACATTAGAAACTGC
GCTTTTTATGGGGTTAGTTTATGTTGTATTAGCACTTATCATTTATGCTGGTGGTCTATTAATTAATAAATTTAGTGAAG
GTAGAATGCGTTCTTATGCATATATCTTATTAACAGCTTCAATTGTAACAATCATTATGACAGTATTAGGTACATATTTC
TCATTAAATCAATTAATGGGTATTTACTTAGCACTTACAATATTTACAATTCCTCAACTCAGATTAGAAACAGTTGAAGA
AAAATCTATTGTGGATCATGGCTTTATGATTCTGGTAGGTTTTGTAGCACTCATACTCATTGGTTTCTTAAGAGAGTTCT
TAGGTACTGGAAGTATTAGTTTACTAGCATTTGGATTAGACACTGTACAAGTGTTTGATGCTAAATTTGGTATTGCTATC
TTAAAAGACAACTCAGGTGGTTTCATCTTAGCAGGATTTATCTTTGCAATCATCAATGCCATACCTTTTGTAAAGGAGGA
TAAAGCAGATGTTATTTAA

Upstream 100 bases:

>100_bases
GATCCAATGCCAGATTCAACAACTGGACCAACTACAAACTCAAACGGTTCACAATACTTAGTAAATCAGTTATTACTAGA
TATTCAAGGAGGGGCTTAAG

Downstream 100 bases:

>100_bases
TTTATTATCTAGTTTATTAGGTGCTGCAATCCTTTCAAATGTTATTTTACAAGGGGTTGGATTAGAAGCAATTAAAGATC
GTGAAATCAGAGTTAAACCA

Product: NADH oxidoreductase complex RnfABCDGE type, E subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNKNNLKPFILLSILPLIYLANTLETALFMGLVYVVLALIIYAGGLLINKFSEGRMRSYAYILLTASIVTIIMTVLGTYF
SLNQLMGIYLALTIFTIPQLRLETVEEKSIVDHGFMILVGFVALILIGFLREFLGTGSISLLAFGLDTVQVFDAKFGIAI
LKDNSGGFILAGFIFAIINAIPFVKEDKADVI

Sequences:

>Translated_192_residues
MNKNNLKPFILLSILPLIYLANTLETALFMGLVYVVLALIIYAGGLLINKFSEGRMRSYAYILLTASIVTIIMTVLGTYF
SLNQLMGIYLALTIFTIPQLRLETVEEKSIVDHGFMILVGFVALILIGFLREFLGTGSISLLAFGLDTVQVFDAKFGIAI
LKDNSGGFILAGFIFAIINAIPFVKEDKADVI
>Mature_192_residues
MNKNNLKPFILLSILPLIYLANTLETALFMGLVYVVLALIIYAGGLLINKFSEGRMRSYAYILLTASIVTIIMTVLGTYF
SLNQLMGIYLALTIFTIPQLRLETVEEKSIVDHGFMILVGFVALILIGFLREFLGTGSISLLAFGLDTVQVFDAKFGIAI
LKDNSGGFILAGFIFAIINAIPFVKEDKADVI

Specific function: Unknown

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:
GO:0005886: NADH oxidoreductase complex RnfABCDGE type, E subunit
GO:0006810: NADH oxidoreductase complex RnfABCDGE type, E subunit
GO:0016020: NADH oxidoreductase complex RnfABCDGE type, E subunit
GO:0016021: NADH oxidoreductase complex RnfABCDGE type, E subunit

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21097; Mature: 21097

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNNLKPFILLSILPLIYLANTLETALFMGLVYVVLALIIYAGGLLINKFSEGRMRSYA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHH
YILLTASIVTIIMTVLGTYFSLNQLMGIYLALTIFTIPQLRLETVEEKSIVDHGFMILVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FVALILIGFLREFLGTGSISLLAFGLDTVQVFDAKFGIAILKDNSGGFILAGFIFAIINA
HHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHCCEEEEEECCCCEEHHHHHHHHHHH
IPFVKEDKADVI
CCCCCCCCCCCC
>Mature Secondary Structure
MNKNNLKPFILLSILPLIYLANTLETALFMGLVYVVLALIIYAGGLLINKFSEGRMRSYA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHH
YILLTASIVTIIMTVLGTYFSLNQLMGIYLALTIFTIPQLRLETVEEKSIVDHGFMILVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FVALILIGFLREFLGTGSISLLAFGLDTVQVFDAKFGIAILKDNSGGFILAGFIFAIINA
HHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHCCEEEEEECCCCEEHHHHHHHHHHH
IPFVKEDKADVI
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA