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The map label for this gene is rzpD [H]

Identifier: 162421935

GI number: 162421935

Start: 2279515

End: 2279973

Strand: Direct

Name: rzpD [H]

Synonym: YpAngola_A2181

Alternate gene names: 162421935

Gene position: 2279515-2279973 (Clockwise)

Preceding gene: 162421375

Following gene: 162418641

Centisome position: 50.61

GC content: 50.76

Gene sequence:

>459_bases
ATGCCTGGAAAGTTAACTACTGCCCTCATTGCTGTAATTGCCGCCCTGCTTGTTGGTGTGACTTATTATCAGAACGAGGC
GGCAAAACTTCAGCGTGATGTAGTAGAAATAGCATCAGTGGCTAATCAGCAGAAGAAAGACCTTCAGCTAATCGAAGCCC
AGCGCCAAGCCGTAGCCGCTATCGATATCAAAACCACCAAGGAATTAGCAGATGTCAAATCTGAAAACGAGCGCCTGCGC
ACTGATATCGCTTCTGGCACTAAGCGGTTGCAACTCAACGCCACATGTTCAAAACCAGCGCCCAAAACCACCGGCCCCGC
CAGCGTCCCTGATGATGCCAGCGCCAGACTTACTAACGCCGCTGAACGGGATTATCTCAGTCTCCGCGAGCGTATCGGAA
TTGCCACAAGCCAAATAAGCGGCTTACAGGACTACATCACTAACGTGTGCCTGAAGTAA

Upstream 100 bases:

>100_bases
GTAACGTGACAGCGGCCTGTGAACAGTTCCCGCGCTGGATATATGGTGGCGGTAAAAAATTGCCGGGGCTGGTGACTCGT
CGCGAGAAGGAGAAGGCGCT

Downstream 100 bases:

>100_bases
GGATTAGCAATGGCTTGGTATCCGGCATGGAATATCAATTGGCAGCGATTCAGGTATTGGCGCGAACAGATAGGATTTGA
GTCAGCTTATTCCAAGTTAA

Product: bacteriophage lysis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MPGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAAIDIKTTKELADVKSENERLR
TDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNAAERDYLSLRERIGIATSQISGLQDYITNVCLK

Sequences:

>Translated_152_residues
MPGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAAIDIKTTKELADVKSENERLR
TDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNAAERDYLSLRERIGIATSQISGLQDYITNVCLK
>Mature_151_residues
PGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAAIDIKTTKELADVKSENERLRT
DIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNAAERDYLSLRERIGIATSQISGLQDYITNVCLK

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=140, Percent_Identity=41.4285714285714, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 16395; Mature: 16264

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDIKTTKELADVKSENERLRTDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
AERDYLSLRERIGIATSQISGLQDYITNVCLK
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGKLTTALIAVIAALLVGVTYYQNEAAKLQRDVVEIASVANQQKKDLQLIEAQRQAVAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDIKTTKELADVKSENERLRTDIASGTKRLQLNATCSKPAPKTTGPASVPDDASARLTNA
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
AERDYLSLRERIGIATSQISGLQDYITNVCLK
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]