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The map label for this gene is yggS [H]

Identifier: 162421828

GI number: 162421828

Start: 138018

End: 138746

Strand: Direct

Name: yggS [H]

Synonym: YpAngola_A0138

Alternate gene names: 162421828

Gene position: 138018-138746 (Clockwise)

Preceding gene: 162418556

Following gene: 162421044

Centisome position: 3.06

GC content: 48.83

Gene sequence:

>729_bases
GTGAAATCCATATCCAACTCCTGGGTCCATATGAGTACTATCCAACAGAATCTACAGGATGTCAGAGCGCGGATCGCAAC
GGCTGCACACAATTGCGGGCGCTCTCCAGAAGAAGTTACATTGCTTGCAGTCAGTAAAACCAAACCTGTGGCGGCTATCG
AAAAAGCCATCGCCGCTGGGCAATATGCTTTTGGTGAAAACTATGTGCAGGAAGGGGTGGATAAAATTCACTCCTTCGTG
GATAACAAAACGCTTGAATGGCACTTTATCGGGCCGCTGCAATCCAATAAAAGCCGGTTAGTGGCTGAAAATTTTGCCTG
GTGTCATACCGTTGATCGGTTGAAAATAGCCCAGCGTCTGAGTGCCCAGCGCCCAGCGGCTATGCCAGCGTTAAACGTAC
TGATTCAGATTAATATCAGTGATGAGCAAAGCAAAGCGGGGATTTCCTTGAGTGAACTCCCCGCCTTGGCTGACAGCATT
AGTACATTACCTAACCTGTGTTTACGCGGGCTGATGGCTATCCCAGCGCCAGAACATGATTATCAGCGGCAATTGGCCGT
ATTTACGCAAATGAATCAGGCGTTCTTGACTTTAAAAGCCCGCTACCCTCAGATAGATACACTTTCTATGGGGATGACTG
ATGATATGGACGCCGCCATTAGCGCCGGCAGTACACTGGTTCGAATTGGTACCGCCATTTTTGGTGCCCGCGTTTATAAC
GCGGATTAA

Upstream 100 bases:

>100_bases
GCCATCACTGGCAAGGTCAGGGTTTTCTAAATCAATGCGTTTGGCTTTTATACGGCTAAACACGGGGTTATTCAGATCTG
AATGTTGATTATTCAGGCTT

Downstream 100 bases:

>100_bases
TCACGGCATTTATTGTTCACTGCACTTACGGAACATAACTCTCTGTTGAACGTAATTATTTGTTGAACATCAGTTCCTGT
TGAACATAAGTCCTCGTTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MKSISNSWVHMSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFV
DNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSI
STLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN
AD

Sequences:

>Translated_242_residues
MKSISNSWVHMSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFV
DNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSI
STLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN
AD
>Mature_242_residues
MKSISNSWVHMSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFV
DNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSI
STLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN
AD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=218, Percent_Identity=39.4495412844037, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1789321, Length=232, Percent_Identity=68.9655172413793, Blast_Score=324, Evalue=3e-90,
Organism=Caenorhabditis elegans, GI17533025, Length=245, Percent_Identity=32.6530612244898, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=233, Percent_Identity=34.7639484978541, Blast_Score=109, Evalue=3e-25,
Organism=Drosophila melanogaster, GI45550861, Length=243, Percent_Identity=39.5061728395062, Blast_Score=131, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26481; Mature: 26481

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSISNSWVHMSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHC
QYAFGENYVQEGVDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRL
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHD
HCCCCCCCCEEEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN
HHHHHHHHHHHHHHEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEEC
AD
CC
>Mature Secondary Structure
MKSISNSWVHMSTIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHC
QYAFGENYVQEGVDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRL
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHD
HCCCCCCCCEEEEEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGARVYN
HHHHHHHHHHHHHHEEEEEECCCCCCEEECCCCCCHHHHHHCCCHHHHHHHHHHHCEEEC
AD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]