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The map label for this gene is ydcI [H]

Identifier: 162419827

GI number: 162419827

Start: 97106

End: 98341

Strand: Direct

Name: ydcI [H]

Synonym: YpAngola_A0094

Alternate gene names: 162419827

Gene position: 97106-98341 (Clockwise)

Preceding gene: 162419271

Following gene: 162421850

Centisome position: 2.16

GC content: 50.08

Gene sequence:

>1236_bases
ATGCAAAAGAAGAATGATCGTAACTCGATAAAAATTATGCAAATAAGAGCATTTTGCATGACGGCTGAACAGGGGGCAGC
TTCCTTAGCGGCGCTCAATTTATTTCGCACTCAGTCAGCGATTACTCGTTCTATTCGTGATCTTGAACACACTTTAGCCA
TCTCGTTATTTGAACGCCACGCCAAGGGCATGCTGTTAACCGATTTGGGCAACGTTATTCTCCCACGAGCTCGTTCTGCC
ATGGAGGAGTTGACTCGGATCCCGGCACTGTTGCGTCGGTTACAACAACGCGACGATGAGGGTATTGAAGACCTTGAACC
CACATGGTTATTCAATGAACGGCGGCTACAGATTTTCCTCTCGCTCTATCGCCAGCAGCACGCGTTGCATGTCGCTCAGG
CACTGGATATCACCCAGTCGGCGGTAAGCGCCGCGTTGAAGGTTTTGGAGAAGGGGGCGGGTATGTATCTGTTCCATCGA
ACACCAAAAGGGATGTTGCCGACCCCTGCCGGTCATGAAATTGCGCCCTGTATCAGCCGGGCATTGAATGCGCTCCACCA
TATTCCGGAAGAGATCACCGCACATAGAGGGGATTTGACCGGCTCGGTACGTGTTGGCGCTCTGCCATTAAGCCGTGCAC
GCCTGCTACCACAGGCAATGATCAAGCTGATTTCTCGCCACCCTGGCATAAAAATAGTCACTAATGAGAGTGGATTTACC
GCCCTGATAGCTGAACTGCGCGCCGGTGATATAGATTTCATTATCGGTGCACTGCGCAATGAGAAAATGCTTTTAGATAT
CCATAGCGAAATATTATTTGAAGAAGAGCTGATTTTATTGGCGCGACCCAACCATCCCCTGTCTGATCGCAGGGTAAAAA
ACCAAGAACTAAAAGATATTCAATGGGTTTTACCCCGAAATCACGCCCCATCACGCCACCTGCTGGAAGTCGCATTCTGC
AAAATGGGACTCGCATCGCCCCAGCCAGTAGTCGAAAGCGGTGATCCCGCCGTGGTACGTGCGCTATTGCTTGGTTCTGA
TATGGTGGCGGCAGTTTCCTCCCATCAACTTGATTTTGAAGTTTCAGAAGGGATCCTCATACCGCTGCAGGTCAACCTTA
CAGGTACGCGACGCGAGATAGGCCTGATGACTCGCCAGAAAGCCTTGAATTCACCCGCTACCGATGCCCTGATCAATTGT
GTTCGCGAAGTTATTCAATCGAGTAACGATAAATAG

Upstream 100 bases:

>100_bases
ATTCTGGCATGGCTTAATTAATGGGAAATAGTGAGTTTTATTGCCCAAGCGACAAGTTTTATTTAAGCTGAAAAAATTAA
ATAAAATAACGCGGCGAAAT

Downstream 100 bases:

>100_bases
GCAGTTTTAGATAAATGAGTTAACCATCTAATTTATTTTTTGATTGATAAGAATACTTTTGTCAGAAAAACAAAAAACTC
CATTTTAGACTGGCACAGAT

Product: LysR family substrate-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSA
MEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHR
TPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFT
ALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFC
KMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
VREVIQSSNDK

Sequences:

>Translated_411_residues
MQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSA
MEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHR
TPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFT
ALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFC
KMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
VREVIQSSNDK
>Mature_411_residues
MQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSA
MEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHR
TPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFT
ALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFC
KMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
VREVIQSSNDK

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081904, Length=309, Percent_Identity=27.5080906148867, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787601, Length=197, Percent_Identity=28.9340101522843, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.1700680272109, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789506, Length=261, Percent_Identity=24.5210727969349, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=206, Percent_Identity=27.6699029126214, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 45694; Mature: 45694

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERH
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFL
HCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHH
SLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
ALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFT
HHHHHHHCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
ALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDI
HHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHCCEEEEECCCCCCCCCHHCHHHHHHH
QWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFE
HEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEE
VSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK
ECCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEHTLAISLFERH
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFL
HCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHHHH
SLYRQQHALHVAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
ALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGIKIVTNESGFT
HHHHHHHCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
ALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDI
HHHHHHHCCCHHHHHHHHCCCEEEEEHHHHHHHHCCEEEEECCCCCCCCCHHCHHHHHHH
QWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVAAVSSHQLDFE
HEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCEE
VSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINCVREVIQSSNDK
ECCCEEEEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]