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The map label for this gene is quuD [H]

Identifier: 162419717

GI number: 162419717

Start: 1511009

End: 1511434

Strand: Direct

Name: quuD [H]

Synonym: YpAngola_A1457

Alternate gene names: 162419717

Gene position: 1511009-1511434 (Clockwise)

Preceding gene: 162418758

Following gene: 162418213

Centisome position: 33.55

GC content: 46.71

Gene sequence:

>426_bases
ATGAGAGACATCCAATTGGTATTAGCGCGGTGGGGGGTATGGGCGAGGTATAGCTCGGGGCTGGATTATTCATCGATAGC
CGCAGGTTTCAAAGGGTTGCTGGCCGATACCTCTAAAAGTAAGGCGTCATGTTGTGACGATGATGGCCTGGTGGTCGATG
GCTGTGTTGCACGATTGAAACAATGTCGGCCAAATGAATATGAATTGATTATTCGCCACTATGTCCTTAACCAGTCAAAA
CGGGCGATTGCACGGCAGCAAAAAAGAGACGAAAAGCTGATTAGGATTAACATGCAGATGGCCGAAGGTTTCATCGATGG
CTGTTTGGCGATGCTAAATGTGAAATTAACCATGGATCCTTTCATTGAGAATTTACCTATTTATGAACAGCCATCAGCAC
GGTCCGAAGAGAATGCCTCAGCCTGA

Upstream 100 bases:

>100_bases
GGCAGAGGTGTCATCGCTGACCCCGCCTTTTGTGGAGTAAGGGTATATGAGTTCATTAAACGGTCCGCAAGCCGGAAATC
ACAGTCAGAAGAGCCAGGGT

Downstream 100 bases:

>100_bases
TATTTTGGGGAGATGCGTGGCACACAAATATTCACAATTCTTTGTGAAGGACTATTTTAGTCTAAAATAAATAAAGTTAT
TTAATAACATTAAGTTAAAT

Product: phage antitermination protein Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQCRPNEYELIIRHYVLNQSK
RAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA

Sequences:

>Translated_141_residues
MRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQCRPNEYELIIRHYVLNQSK
RAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA
>Mature_141_residues
MRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLKQCRPNEYELIIRHYVLNQSK
RAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDPFIENLPIYEQPSARSEENASA

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=125, Percent_Identity=41.6, Blast_Score=106, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 15875; Mature: 15875

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHH
QCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDP
HCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FIENLPIYEQPSARSEENASA
HHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRDIQLVLARWGVWARYSSGLDYSSIAAGFKGLLADTSKSKASCCDDDGLVVDGCVARLK
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHH
QCRPNEYELIIRHYVLNQSKRAIARQQKRDEKLIRINMQMAEGFIDGCLAMLNVKLTMDP
HCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
FIENLPIYEQPSARSEENASA
HHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]