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The map label for this gene is psd

Identifier: 162149078

GI number: 162149078

Start: 3399462

End: 3400139

Strand: Direct

Name: psd

Synonym: GDI_3308

Alternate gene names: 162149078

Gene position: 3399462-3400139 (Clockwise)

Preceding gene: 162149077

Following gene: 162149079

Centisome position: 86.19

GC content: 69.91

Gene sequence:

>678_bases
ATGTCCCTGATCCAGTCCCTGAAACTCGTCCTCGCCCGGCCGCACCCGGCCGCGCGTCCCTTTCTTCTGGCGTCGGGCGC
CGCCGCCCTGGCGGGCCGGGCCCTGCCCTGGCGTCCGGCCCGATGGCTGGGCACCGCCAGCGGCCTGTTCTTCGGGTTCT
GCCTCTATTTCTTCCGTGACCCGGAACGCGTGCCGCCGGTCGATACCCACCTGGCCCTGGCGCCGGCTGACGGCCATGTC
GTATCGGTCGAGAAGGTCGTTCCGCCCGACTCCCTGGACATGGGCGACGTCCCGGTTTGGCGCGTCGCCACCTTCCTGTC
GGTGCTGGACGTGCATGTGAACCGCATGCCCGCCGCCGGCACGGTCACGCGGGTAGCCTACCACCCCGGCCAGTTCCTGA
ACGCCAGCCTGGACAAGGCGTCCGAGCTGAACGAGCGCAACGCGCTGCGCCTGACCCTGCCGGACGGGCGGAACATGGCG
GTGGTGCAGATCGCGGGGCTGATCGCCCGGCGCATCCTGTGCGACGCCGAGGAAGGCATGACCTATGAAGCCGGCGAGCG
GTTCGGCCTGATCCGCTTCGGATCGCGCACCGACCTGTATCTGCCGCCGGGGGTCGAACCCCTGGTCACGGTGGGACAGA
CGATGGTCGGCGGCGAAACGGTCATGGCGCGTCTCTGA

Upstream 100 bases:

>100_bases
GATCCGTGCCACACTTCGCGCCAGACGGGGCCCGGACCGGCTGGACCAGCCGGGACCGATGCTTGACCGTTACACCCGAA
CGCTTCATGAACCTCGGCCC

Downstream 100 bases:

>100_bases
CGCCGATGGATTCCCCCAACGTATCCCCTGGCGGCCCGCAGGACATGCCGGCGGTCCCGGTGCCCGAAGCGCCGGCGGCC
CTGCGCCGGCCCCGGCGGCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSLIQSLKLVLARPHPAARPFLLASGAAALAGRALPWRPARWLGTASGLFFGFCLYFFRDPERVPPVDTHLALAPADGHV
VSVEKVVPPDSLDMGDVPVWRVATFLSVLDVHVNRMPAAGTVTRVAYHPGQFLNASLDKASELNERNALRLTLPDGRNMA
VVQIAGLIARRILCDAEEGMTYEAGERFGLIRFGSRTDLYLPPGVEPLVTVGQTMVGGETVMARL

Sequences:

>Translated_225_residues
MSLIQSLKLVLARPHPAARPFLLASGAAALAGRALPWRPARWLGTASGLFFGFCLYFFRDPERVPPVDTHLALAPADGHV
VSVEKVVPPDSLDMGDVPVWRVATFLSVLDVHVNRMPAAGTVTRVAYHPGQFLNASLDKASELNERNALRLTLPDGRNMA
VVQIAGLIARRILCDAEEGMTYEAGERFGLIRFGSRTDLYLPPGVEPLVTVGQTMVGGETVMARL
>Mature_224_residues
SLIQSLKLVLARPHPAARPFLLASGAAALAGRALPWRPARWLGTASGLFFGFCLYFFRDPERVPPVDTHLALAPADGHVV
SVEKVVPPDSLDMGDVPVWRVATFLSVLDVHVNRMPAAGTVTRVAYHPGQFLNASLDKASELNERNALRLTLPDGRNMAV
VQIAGLIARRILCDAEEGMTYEAGERFGLIRFGSRTDLYLPPGVEPLVTVGQTMVGGETVMARL

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_GLUDA (A9H1G5)

Other databases:

- EMBL:   AM889285
- EMBL:   CP001189
- RefSeq:   YP_001603539.1
- RefSeq:   YP_002277407.1
- GeneID:   5790729
- GeneID:   6976496
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_3062
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24366; Mature: 24234

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIQSLKLVLARPHPAARPFLLASGAAALAGRALPWRPARWLGTASGLFFGFCLYFFRD
CCHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
PERVPPVDTHLALAPADGHVVSVEKVVPPDSLDMGDVPVWRVATFLSVLDVHVNRMPAAG
CCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
TVTRVAYHPGQFLNASLDKASELNERNALRLTLPDGRNMAVVQIAGLIARRILCDAEEGM
CEEEEEECCCHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
TYEAGERFGLIRFGSRTDLYLPPGVEPLVTVGQTMVGGETVMARL
EECCCCCEEEEEECCCCCEEECCCCCHHHHHCCHHCCCCEEEECC
>Mature Secondary Structure 
SLIQSLKLVLARPHPAARPFLLASGAAALAGRALPWRPARWLGTASGLFFGFCLYFFRD
CHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHCC
PERVPPVDTHLALAPADGHVVSVEKVVPPDSLDMGDVPVWRVATFLSVLDVHVNRMPAAG
CCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
TVTRVAYHPGQFLNASLDKASELNERNALRLTLPDGRNMAVVQIAGLIARRILCDAEEGM
CEEEEEECCCHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
TYEAGERFGLIRFGSRTDLYLPPGVEPLVTVGQTMVGGETVMARL
EECCCCCEEEEEECCCCCEEECCCCCHHHHHCCHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA