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The map label for this gene is 162148776

Identifier: 162148776

GI number: 162148776

Start: 3092029

End: 3093621

Strand: Reverse

Name: 162148776

Synonym: GDI_3005

Alternate gene names: NA

Gene position: 3093621-3092029 (Counterclockwise)

Preceding gene: 162148777

Following gene: 162148775

Centisome position: 78.44

GC content: 60.77

Gene sequence:

>1593_bases
ATGAGTCGCCTCGACTTCATCATTGTCGGTGCGGGTGCTTCCGGCGCGGCGGTAGCCTGGTCGCTCGTTTCCAGGGGATA
CAAGGTCCTTTGTCTGGACCGCGGTCCACGGATGGACCCATCGCATTATCCGTCTACCGGGCATGATTGGGAGATACGCA
AGCGAACAGAATTCAACCCTGTCACGGCAGAGCGCCAGAACCGGTTCGACTACCCCATCGACGACAGCCGATCGCCGATC
GCCGTGTGTAACTTCAATGCCGTGGGCGGATCGACGATTCTCTATTCCGGCCATTTCCCGCGCTTTCTCGAAGCTGACTT
CGCACTGAACAGTCGCGAGGGAGTGGGCGCGGATTGGCCATTCGGGTACGGGGAACTGGCCCCGTACTTCACGTTGAACG
AGAGGATGATGGGGCTGTCCGGCCTCGCCGGTGATCCCTACTATCCGCAGATCGAAAAAACCCTTCCGCCCGTTCCACTC
GGAAGTGGGGGGGAGCGGCTGGCGAAGGCCTTCAACGCCAAGGGATGGCATTGGTGGCCGAGCTTTTCCGCAATTCTGAC
AAGACCGAGAGGCGAGCGAGGCGCCTGCCTCAATCTCGGTCCCTGCAACACCGGCTGTCCGCAAGGTGCCAAGGCCAGTG
CGGACAACACCTACCTGAAGGAGGCCCTGCGCCTCGGCCTGATGCTCGTGCCGGAATTCGCGGTGTCCCGAGTGCTGGTC
CGCGACGGCAAGGCCTACGGTGTGGAGGGCTTTGACGATGCCGGGGAAGGGCGGGTTTTCGAGGCCGATCATGTCATCCT
GACGTCGAGCGCGATCGGTACGGCGCGTATCCTCCTCAATTCACGGACCGACGAGCGGCCGCAAGGGTTGGGCAATACGA
GTGGTCAGGTGGGCCGCAATCTGATGATTCACCCGCTGGGCTATGTGGAAGGCATTTTCGATCAGCGGTTCGATACCGAT
TCCGGCCCCCAGGGCTGCATGCTGTATAGCCTGCAGTTTCATCGCACACCCGGCGCGGACCATCGCCTCGGCTACATGAT
GCAGGCATTGCGTGGCACCGGCCCCGTCGAAACGGCGCTTTCCGCGCTGGCTCGGCGTAAGCTCAGGTTCGGCACGCAGG
TCTATGACGATTTCGACGCGTTCTACGCGAAACAGCTCGTCATCGCCATTGTCTGCGAAGACCTGCCCAGGACGGAAAAC
CGGGTGGAACTCGACGAGACCCGGCACGATCGCTTCGGCGATCCGGGTGTGAAAATTCACTACGTTCTGCATGACAACAC
GAAGAAGATGATGATCCATGGCATGAGCCGCGCGCGTGAACTGATGGCCGCTGCCGGCGCGATCAGAAGTTCCGCGTATG
GTCCCGTACGCAATACGGGCTGGCACCTGCTGGGAACGGCGCGAATGGGGGACGATTCCCGCAATTCGGTTGTCGATGCC
CAGGGGCGCGTCTACGATACCGCCAACCTTTATGTGGCGGATTCCAGCGTCTTCGTGACCGCGTCATGCGTCAATCCGGC
CAATACCATTCAGGCAGTGGCCCTTATGTTGGCGGATCGTATAGATAAGCATGTCAGATCGACTCGCTCTTGA

Upstream 100 bases:

>100_bases
GCAAGGGGCATGCGACAGGCTACACGAACGGTACGGTCGCCTGCGAAGCCGAGATGATGATCACCATACCGGAAATCTTC
GAGCAGTATCTTCCCAGGAA

Downstream 100 bases:

>100_bases
ACTCTTCTATGCGATGTTCCCCGGGGACCCGCTCCGTCAGGTTCCGGAGGCGAGGGCCACCGGCGCTCGGCTGCGTCTCC
AGAACGGCTTTCCGTATCTT

Product: flavoproteins oxidoreductases

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MSRLDFIIVGAGASGAAVAWSLVSRGYKVLCLDRGPRMDPSHYPSTGHDWEIRKRTEFNPVTAERQNRFDYPIDDSRSPI
AVCNFNAVGGSTILYSGHFPRFLEADFALNSREGVGADWPFGYGELAPYFTLNERMMGLSGLAGDPYYPQIEKTLPPVPL
GSGGERLAKAFNAKGWHWWPSFSAILTRPRGERGACLNLGPCNTGCPQGAKASADNTYLKEALRLGLMLVPEFAVSRVLV
RDGKAYGVEGFDDAGEGRVFEADHVILTSSAIGTARILLNSRTDERPQGLGNTSGQVGRNLMIHPLGYVEGIFDQRFDTD
SGPQGCMLYSLQFHRTPGADHRLGYMMQALRGTGPVETALSALARRKLRFGTQVYDDFDAFYAKQLVIAIVCEDLPRTEN
RVELDETRHDRFGDPGVKIHYVLHDNTKKMMIHGMSRARELMAAAGAIRSSAYGPVRNTGWHLLGTARMGDDSRNSVVDA
QGRVYDTANLYVADSSVFVTASCVNPANTIQAVALMLADRIDKHVRSTRS

Sequences:

>Translated_530_residues
MSRLDFIIVGAGASGAAVAWSLVSRGYKVLCLDRGPRMDPSHYPSTGHDWEIRKRTEFNPVTAERQNRFDYPIDDSRSPI
AVCNFNAVGGSTILYSGHFPRFLEADFALNSREGVGADWPFGYGELAPYFTLNERMMGLSGLAGDPYYPQIEKTLPPVPL
GSGGERLAKAFNAKGWHWWPSFSAILTRPRGERGACLNLGPCNTGCPQGAKASADNTYLKEALRLGLMLVPEFAVSRVLV
RDGKAYGVEGFDDAGEGRVFEADHVILTSSAIGTARILLNSRTDERPQGLGNTSGQVGRNLMIHPLGYVEGIFDQRFDTD
SGPQGCMLYSLQFHRTPGADHRLGYMMQALRGTGPVETALSALARRKLRFGTQVYDDFDAFYAKQLVIAIVCEDLPRTEN
RVELDETRHDRFGDPGVKIHYVLHDNTKKMMIHGMSRARELMAAAGAIRSSAYGPVRNTGWHLLGTARMGDDSRNSVVDA
QGRVYDTANLYVADSSVFVTASCVNPANTIQAVALMLADRIDKHVRSTRS
>Mature_529_residues
SRLDFIIVGAGASGAAVAWSLVSRGYKVLCLDRGPRMDPSHYPSTGHDWEIRKRTEFNPVTAERQNRFDYPIDDSRSPIA
VCNFNAVGGSTILYSGHFPRFLEADFALNSREGVGADWPFGYGELAPYFTLNERMMGLSGLAGDPYYPQIEKTLPPVPLG
SGGERLAKAFNAKGWHWWPSFSAILTRPRGERGACLNLGPCNTGCPQGAKASADNTYLKEALRLGLMLVPEFAVSRVLVR
DGKAYGVEGFDDAGEGRVFEADHVILTSSAIGTARILLNSRTDERPQGLGNTSGQVGRNLMIHPLGYVEGIFDQRFDTDS
GPQGCMLYSLQFHRTPGADHRLGYMMQALRGTGPVETALSALARRKLRFGTQVYDDFDAFYAKQLVIAIVCEDLPRTENR
VELDETRHDRFGDPGVKIHYVLHDNTKKMMIHGMSRARELMAAAGAIRSSAYGPVRNTGWHLLGTARMGDDSRNSVVDAQ
GRVYDTANLYVADSSVFVTASCVNPANTIQAVALMLADRIDKHVRSTRS

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: NA

Molecular weight: Translated: 58196; Mature: 58064

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLDFIIVGAGASGAAVAWSLVSRGYKVLCLDRGPRMDPSHYPSTGHDWEIRKRTEFNP
CCCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCC
VTAERQNRFDYPIDDSRSPIAVCNFNAVGGSTILYSGHFPRFLEADFALNSREGVGADWP
CCCHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCC
FGYGELAPYFTLNERMMGLSGLAGDPYYPQIEKTLPPVPLGSGGERLAKAFNAKGWHWWP
CCCCCCCCEEEECHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCEECC
SFSAILTRPRGERGACLNLGPCNTGCPQGAKASADNTYLKEALRLGLMLVPEFAVSRVLV
CCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECHHHHHHHHH
RDGKAYGVEGFDDAGEGRVFEADHVILTSSAIGTARILLNSRTDERPQGLGNTSGQVGRN
HCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHCCC
LMIHPLGYVEGIFDQRFDTDSGPQGCMLYSLQFHRTPGADHRLGYMMQALRGTGPVETAL
EEEECHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH
SALARRKLRFGTQVYDDFDAFYAKQLVIAIVCEDLPRTENRVELDETRHDRFGDPGVKIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHCCCCCCCCEEE
YVLHDNTKKMMIHGMSRARELMAAAGAIRSSAYGPVRNTGWHLLGTARMGDDSRNSVVDA
EEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEECC
QGRVYDTANLYVADSSVFVTASCVNPANTIQAVALMLADRIDKHVRSTRS
CCCEEECCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SRLDFIIVGAGASGAAVAWSLVSRGYKVLCLDRGPRMDPSHYPSTGHDWEIRKRTEFNP
CCEEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCC
VTAERQNRFDYPIDDSRSPIAVCNFNAVGGSTILYSGHFPRFLEADFALNSREGVGADWP
CCCHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCC
FGYGELAPYFTLNERMMGLSGLAGDPYYPQIEKTLPPVPLGSGGERLAKAFNAKGWHWWP
CCCCCCCCEEEECHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCEECC
SFSAILTRPRGERGACLNLGPCNTGCPQGAKASADNTYLKEALRLGLMLVPEFAVSRVLV
CCHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECHHHHHHHHH
RDGKAYGVEGFDDAGEGRVFEADHVILTSSAIGTARILLNSRTDERPQGLGNTSGQVGRN
HCCCCCCCCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCCCCCCCCCHHHCCC
LMIHPLGYVEGIFDQRFDTDSGPQGCMLYSLQFHRTPGADHRLGYMMQALRGTGPVETAL
EEEECHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH
SALARRKLRFGTQVYDDFDAFYAKQLVIAIVCEDLPRTENRVELDETRHDRFGDPGVKIH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHCCCCCCCCEEE
YVLHDNTKKMMIHGMSRARELMAAAGAIRSSAYGPVRNTGWHLLGTARMGDDSRNSVVDA
EEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCEECC
QGRVYDTANLYVADSSVFVTASCVNPANTIQAVALMLADRIDKHVRSTRS
CCCEEECCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]