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The map label for this gene is abaB [H]

Identifier: 162148617

GI number: 162148617

Start: 2935367

End: 2936245

Strand: Direct

Name: abaB [H]

Synonym: GDI_2844

Alternate gene names: 162148617

Gene position: 2935367-2936245 (Clockwise)

Preceding gene: 162148613

Following gene: 162148618

Centisome position: 74.42

GC content: 64.96

Gene sequence:

>879_bases
ATGTCGCTTCTGCACCTGCGCACCTTTGTCGAAGTCCACAGATGTCGTTCGATCAGCGAAGCCGCACGGGCATTGTCGCT
GACCCAGCCGGCCGTGTCGCAACATATCGCATCACTGGAAGCACAACTGGGGCGGCCACTGTTCGTCCGCCATACGCGCG
GCGTAAGGCCCACCGCCGCTGCGGACGATCTGGCGATGACAATCGGAGACAGTCTCGACCGGGCTGAAACAGCATTGGCG
GCGGCGAAGGCACGGTCGGCCGATCTCACCGGGACACTGCATCTCGCGGCGCCGGCGGAGTATCTGGGCGAGTATGTGGC
GCCGCGTCTTGCACCCCTGATCGAAGCCGGACTGGACCTGCGCCTGCATATCGGCGGTCGCGACGCCTTGTACGACTGGC
TAATGTCCGATACCGTGGATCTGGGACTGACGGCATCCCTCCCGGAGGATCCACGCCTGAACTGGGCGCAACTCGGAATC
GAAACTCTGCAAGCCGTGGCCATCCCGGACATCGCCGACCGCATCCATCATCTCGGCCTGAACGACGGACTGCGCGTGGT
GCCGCATATTGCCTACGATCTCGAACGCCCGCTGCTCCGCACCTGGCTGAGTGCGAACGGCCTTGCCGTCGATCATCCCC
CTGCCGCGACCGCTCCGGATATGCGCGTCTTGCGCGCGATGCTTATGGCGGGCATCGGCTGGTCGGTCCTGCCCGACTAT
CTGACGCGGGAGCAGCGGCAGGCCGGCACCCTACGAGAGATCGCGGCACCGAAAGCCGTTCCGCGCAACGCCTTTCACCT
GGTCTGGGCGCGCACTGCGCTGCGACACCCCCGCGTGGCTTTCGCCCGGAAGGCATTACTGGCGGTACTGTCCGAATAA

Upstream 100 bases:

>100_bases
GCCGTTTTCTCCCTTTTGAAAACAGGAGCCTAAGCCCGAACAGTCATAACGACATCAAAGAAGACAGGCGGGCTGCTATA
ATTTTTGTTATAGGTAACCC

Downstream 100 bases:

>100_bases
CGTTCTGTTATCGAGCATAATATTCTCTATCCAAACGACTTCACTTTCCAAATCCACGACCATGCGAACTCCGCCAAGCT
TGACGGAAGCGTCCCTTTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSLLHLRTFVEVHRCRSISEAARALSLTQPAVSQHIASLEAQLGRPLFVRHTRGVRPTAAADDLAMTIGDSLDRAETALA
AAKARSADLTGTLHLAAPAEYLGEYVAPRLAPLIEAGLDLRLHIGGRDALYDWLMSDTVDLGLTASLPEDPRLNWAQLGI
ETLQAVAIPDIADRIHHLGLNDGLRVVPHIAYDLERPLLRTWLSANGLAVDHPPAATAPDMRVLRAMLMAGIGWSVLPDY
LTREQRQAGTLREIAAPKAVPRNAFHLVWARTALRHPRVAFARKALLAVLSE

Sequences:

>Translated_292_residues
MSLLHLRTFVEVHRCRSISEAARALSLTQPAVSQHIASLEAQLGRPLFVRHTRGVRPTAAADDLAMTIGDSLDRAETALA
AAKARSADLTGTLHLAAPAEYLGEYVAPRLAPLIEAGLDLRLHIGGRDALYDWLMSDTVDLGLTASLPEDPRLNWAQLGI
ETLQAVAIPDIADRIHHLGLNDGLRVVPHIAYDLERPLLRTWLSANGLAVDHPPAATAPDMRVLRAMLMAGIGWSVLPDY
LTREQRQAGTLREIAAPKAVPRNAFHLVWARTALRHPRVAFARKALLAVLSE
>Mature_291_residues
SLLHLRTFVEVHRCRSISEAARALSLTQPAVSQHIASLEAQLGRPLFVRHTRGVRPTAAADDLAMTIGDSLDRAETALAA
AKARSADLTGTLHLAAPAEYLGEYVAPRLAPLIEAGLDLRLHIGGRDALYDWLMSDTVDLGLTASLPEDPRLNWAQLGIE
TLQAVAIPDIADRIHHLGLNDGLRVVPHIAYDLERPLLRTWLSANGLAVDHPPAATAPDMRVLRAMLMAGIGWSVLPDYL
TREQRQAGTLREIAAPKAVPRNAFHLVWARTALRHPRVAFARKALLAVLSE

Specific function: Putative regulator of secondary metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=168, Percent_Identity=32.7380952380952, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31822; Mature: 31691

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLHLRTFVEVHRCRSISEAARALSLTQPAVSQHIASLEAQLGRPLFVRHTRGVRPTAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
ADDLAMTIGDSLDRAETALAAAKARSADLTGTLHLAAPAEYLGEYVAPRLAPLIEAGLDL
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCE
RLHIGGRDALYDWLMSDTVDLGLTASLPEDPRLNWAQLGIETLQAVAIPDIADRIHHLGL
EEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCC
NDGLRVVPHIAYDLERPLLRTWLSANGLAVDHPPAATAPDMRVLRAMLMAGIGWSVLPDY
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LTREQRQAGTLREIAAPKAVPRNAFHLVWARTALRHPRVAFARKALLAVLSE
HHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLLHLRTFVEVHRCRSISEAARALSLTQPAVSQHIASLEAQLGRPLFVRHTRGVRPTAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC
ADDLAMTIGDSLDRAETALAAAKARSADLTGTLHLAAPAEYLGEYVAPRLAPLIEAGLDL
HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCE
RLHIGGRDALYDWLMSDTVDLGLTASLPEDPRLNWAQLGIETLQAVAIPDIADRIHHLGL
EEEECCHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCC
NDGLRVVPHIAYDLERPLLRTWLSANGLAVDHPPAATAPDMRVLRAMLMAGIGWSVLPDY
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
LTREQRQAGTLREIAAPKAVPRNAFHLVWARTALRHPRVAFARKALLAVLSE
HHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9037760 [H]