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The map label for this gene is ycfQ [C]

Identifier: 162148553

GI number: 162148553

Start: 2862381

End: 2863016

Strand: Reverse

Name: ycfQ [C]

Synonym: GDI_2777

Alternate gene names: 162148553

Gene position: 2863016-2862381 (Counterclockwise)

Preceding gene: 162148555

Following gene: 162148551

Centisome position: 72.59

GC content: 58.33

Gene sequence:

>636_bases
ATGACCCGCGAGAGAACGATTACAAACCGCCCTTTGACGCCCCGTGGCGCGGCGACAAAACAGCGTATCGTCGAGGGCGC
TGCCGAGTTGATCTATCTGCACGGCGCTGAAAACGTGAGCCTCGACACTGTGATGGAGGTAACGAACACCAGCAAATCCC
AGCTTTATCATTATTTCGCCAATAAACAGGCGCTCATTCGCGACGTCATCGACCTGCAAACCAGTCGGATCCTGGCCGCC
AACGCAAAGTCTCTCGGTGGGCTGGATTCCTTCGTCGCCTTGCGTGCATGGGGCGACATGATTATCGCAGCGTTTCGGGC
CAGTGGCGGAATCGGTGGCTGCCCGATCGGCTCGCTTGCCAGCGAGCTGTCCACACAGTCGGAAGAGGCAAGGCTTCAGC
TCAGGCAGAGCTTTTCAGACTGGAGCAACGTCATCGAGAACGGCTTGCGCCGGATGCGGCAGATCGGTCAGCTGGACTCG
GATACGGATGTTGCCGCTGTGGCGGTGGCGATGGTCGCGGCGGTCCAGGGTGGAATAATTCTGGCGAAAACGAGCCGCGA
AACCCGTCCATTAGAACTCGCCATCGACATGGCGCTTGCATATGTAAAACGACATGCCAGTGTTGTCGTCGGGTAG

Upstream 100 bases:

>100_bases
GAGCTGTCCTGTCATTTTCTTCCTCGTTGATATGGACGATAGCGTCGTGGCATGCGACTTCCAAAGTGGACTGTCCAGTC
CATTATGTTGGAATTGAACC

Downstream 100 bases:

>100_bases
AGCGTCCATTCTGAAAATTGCCTGCGAGACCGCTCACACCATCGAATTCATCAGATCCTCGACAAATCCTGCGAACTGGC
GTGCTTTCGCGGTCATCATG

Product: transcription regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTRERTITNRPLTPRGAATKQRIVEGAAELIYLHGAENVSLDTVMEVTNTSKSQLYHYFANKQALIRDVIDLQTSRILAA
NAKSLGGLDSFVALRAWGDMIIAAFRASGGIGGCPIGSLASELSTQSEEARLQLRQSFSDWSNVIENGLRRMRQIGQLDS
DTDVAAVAVAMVAAVQGGIILAKTSRETRPLELAIDMALAYVKRHASVVVG

Sequences:

>Translated_211_residues
MTRERTITNRPLTPRGAATKQRIVEGAAELIYLHGAENVSLDTVMEVTNTSKSQLYHYFANKQALIRDVIDLQTSRILAA
NAKSLGGLDSFVALRAWGDMIIAAFRASGGIGGCPIGSLASELSTQSEEARLQLRQSFSDWSNVIENGLRRMRQIGQLDS
DTDVAAVAVAMVAAVQGGIILAKTSRETRPLELAIDMALAYVKRHASVVVG
>Mature_210_residues
TRERTITNRPLTPRGAATKQRIVEGAAELIYLHGAENVSLDTVMEVTNTSKSQLYHYFANKQALIRDVIDLQTSRILAAN
AKSLGGLDSFVALRAWGDMIIAAFRASGGIGGCPIGSLASELSTQSEEARLQLRQSFSDWSNVIENGLRRMRQIGQLDSD
TDVAAVAVAMVAAVQGGIILAKTSRETRPLELAIDMALAYVKRHASVVVG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22755; Mature: 22624

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRERTITNRPLTPRGAATKQRIVEGAAELIYLHGAENVSLDTVMEVTNTSKSQLYHYFA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCHHHHHHHHHH
NKQALIRDVIDLQTSRILAANAKSLGGLDSFVALRAWGDMIIAAFRASGGIGGCPIGSLA
CHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SELSTQSEEARLQLRQSFSDWSNVIENGLRRMRQIGQLDSDTDVAAVAVAMVAAVQGGII
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEE
LAKTSRETRPLELAIDMALAYVKRHASVVVG
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRERTITNRPLTPRGAATKQRIVEGAAELIYLHGAENVSLDTVMEVTNTSKSQLYHYFA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCHHHHHHHHHH
NKQALIRDVIDLQTSRILAANAKSLGGLDSFVALRAWGDMIIAAFRASGGIGGCPIGSLA
CHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SELSTQSEEARLQLRQSFSDWSNVIENGLRRMRQIGQLDSDTDVAAVAVAMVAAVQGGII
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEE
LAKTSRETRPLELAIDMALAYVKRHASVVVG
EEECCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]