| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is trbE [H]
Identifier: 162148519
GI number: 162148519
Start: 2834802
End: 2837234
Strand: Reverse
Name: trbE [H]
Synonym: GDI_2742
Alternate gene names: 162148519
Gene position: 2837234-2834802 (Counterclockwise)
Preceding gene: 162148520
Following gene: 162148518
Centisome position: 71.94
GC content: 62.97
Gene sequence:
>2433_bases ATGATGTCCCTTGGGGAATATCGCAATCGTGCTGCTCTGCTGTCGGACTACCTGCCCTGGGCCGCGCTGGTTGAGAAAAG CGTGGTCCTGAACAAGGATGGTTCCTTCCAGCGTACGGCGAAAATTCGCGGTCCAGATCTGGATAGCGCCACACCAGCGG AACTGGTTGGTGTCACCGGACGGTTGAACAATGCGCTCCGTCGTCTTGGCTCCGGCTGGGCGGTGTTCGTCGAGGCGCAG CGCGTCCCGGCGACGCTTTATCCCGAGAGCGATTTCCCCGATGCTGCCTCGCACATGGTCGATCTGGAACGGCGCGAGGC GTTCGAGGATGAGGGCGCGCATTTCGAGAGCCGGTATTTTCTGACCCTGGTCTGGCTGCCGCCAGCGGAATCATCGGGCC GTGCCGAACGCTTTCTCTATGAGGGCAGGGAGCGCGAGGGGCCTGATCCGCATGGAATGCTTCATGCGTTCGTGGATCGC ACGGACCGGATGCTGGCGTTGCTGGAGGGCTTCATGCCCGAAGCGGCGTGGCTCGATGACGGCGAGACGCTGACATACCT GCATTCGACGATCTCGACCCGGCAGCAGCGTGTCCGTGTACCGGAAATCCCGATGCACCTCGATGCCCTGCTGGTGGACC AGCCGCTTTCGGGCGGTCTGGAACCGAAACTCGGCGATGCGTATCTGAAAACCCTGACGATCACCGGTTTCCCGTCGCGG ACCTTCCCCGGAATCCTGGATGACCTGAACCGGCTGGCCATGCCCTATCGCTGGTCCACCCGCGCCATCCTGCTCGACAA GACGGATGCGACGAAGGTGCTGACCCGCATTCGTCGCCAGTGGTTCGCCAAACGGAAATCGATCGCAGCGATCGTGCGTG AGGTGATGACCAACGAGGCGTCGGCCCTGGTTGATAACGATGCCGCCAACAAGGCGGCCGACGCTGATCTGGCCCTGCAA TCGCTGGGGGCGGATGATGTCGGGCAGGCCTACATCACCGCGACCGTCACGGTTTGGGATGGTTCCGCTGCCATCGCTGC GGAAAAGCTCCGCCTGGTCGAGAAGATCATTCAGGGCCGCGACTTCACCTGCATGGCCGAAAGCCTGAATGCCGTTGAGG CGTGGCTGGGATCTCTGCCCGGTCATGTCTATGCCAATGTTCGTCAACCGCCGGTCTCGACCTTGAATCTGGCCCACATG ATCCCGCTGTCGGCGGTCTGGGCTGGGCCGGAGCAGGACGGGCATTTCAAGGCGCCGCCGCTGTTCTATGGGAAAACAGC CGGGGCGACGCCATTCCGGTTTTCCCTGCATGTCGGGGATGTCGGTCACACCCTGATCGCCGGCCCGACAGGGGCGGGCA AATCTGTGCTGCTGGCTCTGATGGCGCTCCAGTTTCGTCGCTACGTGGGATCGCAGATTTTCGTATTTGATTTCGGCGGC TCTATGCGGGCCGCAACACTCGCGATGGGTGGGGACTGGCATGATCTGGGTGGCGGGCTGACAGATGAGGGAGATGGTGA TCTCGCCGTCGCCCTCCAGCCGCTGGCGTGGATTGACGATCCCGACGAGCGCAAATGGGCCACGGAATGGCTGGGGCAGA TTCTTGTCGGCGAAGGGTTAACACTTACCCCCGAGGTGAAGTCCCACCTCTGGTCGGCCCTCAATTCCCTGGCGTCCTCG CCCGTGCATGAGCGGACCCTGTCAGGGTTAGTCGCCCTGCTCCAGTCCAACGCTCTGAAGCAGGCTTTGGCACCGTACTG CCTCGGCGGTCCCTATGGCCACCTGCTCGATGCCGATACCGAGCGTCTGGGCGATGCCAATGTGGTGGTGTTCGAGACCG AAGGGCTGATCGGCTCCGGCGCGGCGTCTTCCGTGCTGTCCTATCTGTTTCACCGCATCGAGGGCCGTCTGGACGGGCGG CCCACCCTGCTGGTCATCGACGAGGGCTGGCTGGTGCTGGATGACGGCGATTTCGCGGGGCAACTCCGGGAGTGGCTGAA AACCCTGCGCAAGAAGAATGCGTCGGTGATTTTCGCCACCCAGTCCCTGTCCGACATCGCGAACAACGCGATTGCGCCGG CCGTGGTGGAAAGTTGCCCGACGCGGATCTTCCTGCCGAACGAGCGGGCCATCGAGCCGCAGATAGCCACGATTTATCGG GATTTCGGGCTGAATGACCGGCAGATCGCCATCATTGCCCGTGCCGCGTCGAAGCGGGAGTATTATTGCCAGACCCAGCG CGGCAACCGTCTGTTCGAGCTGGGGCTGGGACCGGTGGCGCTCGCCCTGTGCGCGGCATCCGGGAAGGACGATCACAAGC TGATTGATGCGGTGCTGGCGGAACACGGACGTGCCGGATTTCTCGCGGCATGGTTCGACGCACGCAGCGTGGCATGGGCT GCGGACCTTCTGCGGGAAGGAGACGTGCCATGA
Upstream 100 bases:
>100_bases TCTGGCGGTCTGGGGTGCGAAGCGCGATCCGCTGTTCATCGAGGTGGGACGGCGGCATCTGCGCTACCCCGCCTGGCTCC GGACTTAAGGAGGATCGGCC
Downstream 100 bases:
>100_bases CGGAAAAATTCTTCCGGATTCATGCAACACTTTTCCGTCGTATGGGACTGTTCGCATCCGTCACGGCGCTGGCCGTTGGT GCCGGCGTCAGTTCGGTGCA
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MMSLGEYRNRAALLSDYLPWAALVEKSVVLNKDGSFQRTAKIRGPDLDSATPAELVGVTGRLNNALRRLGSGWAVFVEAQ RVPATLYPESDFPDAASHMVDLERREAFEDEGAHFESRYFLTLVWLPPAESSGRAERFLYEGREREGPDPHGMLHAFVDR TDRMLALLEGFMPEAAWLDDGETLTYLHSTISTRQQRVRVPEIPMHLDALLVDQPLSGGLEPKLGDAYLKTLTITGFPSR TFPGILDDLNRLAMPYRWSTRAILLDKTDATKVLTRIRRQWFAKRKSIAAIVREVMTNEASALVDNDAANKAADADLALQ SLGADDVGQAYITATVTVWDGSAAIAAEKLRLVEKIIQGRDFTCMAESLNAVEAWLGSLPGHVYANVRQPPVSTLNLAHM IPLSAVWAGPEQDGHFKAPPLFYGKTAGATPFRFSLHVGDVGHTLIAGPTGAGKSVLLALMALQFRRYVGSQIFVFDFGG SMRAATLAMGGDWHDLGGGLTDEGDGDLAVALQPLAWIDDPDERKWATEWLGQILVGEGLTLTPEVKSHLWSALNSLASS PVHERTLSGLVALLQSNALKQALAPYCLGGPYGHLLDADTERLGDANVVVFETEGLIGSGAASSVLSYLFHRIEGRLDGR PTLLVIDEGWLVLDDGDFAGQLREWLKTLRKKNASVIFATQSLSDIANNAIAPAVVESCPTRIFLPNERAIEPQIATIYR DFGLNDRQIAIIARAASKREYYCQTQRGNRLFELGLGPVALALCAASGKDDHKLIDAVLAEHGRAGFLAAWFDARSVAWA ADLLREGDVP
Sequences:
>Translated_810_residues MMSLGEYRNRAALLSDYLPWAALVEKSVVLNKDGSFQRTAKIRGPDLDSATPAELVGVTGRLNNALRRLGSGWAVFVEAQ RVPATLYPESDFPDAASHMVDLERREAFEDEGAHFESRYFLTLVWLPPAESSGRAERFLYEGREREGPDPHGMLHAFVDR TDRMLALLEGFMPEAAWLDDGETLTYLHSTISTRQQRVRVPEIPMHLDALLVDQPLSGGLEPKLGDAYLKTLTITGFPSR TFPGILDDLNRLAMPYRWSTRAILLDKTDATKVLTRIRRQWFAKRKSIAAIVREVMTNEASALVDNDAANKAADADLALQ SLGADDVGQAYITATVTVWDGSAAIAAEKLRLVEKIIQGRDFTCMAESLNAVEAWLGSLPGHVYANVRQPPVSTLNLAHM IPLSAVWAGPEQDGHFKAPPLFYGKTAGATPFRFSLHVGDVGHTLIAGPTGAGKSVLLALMALQFRRYVGSQIFVFDFGG SMRAATLAMGGDWHDLGGGLTDEGDGDLAVALQPLAWIDDPDERKWATEWLGQILVGEGLTLTPEVKSHLWSALNSLASS PVHERTLSGLVALLQSNALKQALAPYCLGGPYGHLLDADTERLGDANVVVFETEGLIGSGAASSVLSYLFHRIEGRLDGR PTLLVIDEGWLVLDDGDFAGQLREWLKTLRKKNASVIFATQSLSDIANNAIAPAVVESCPTRIFLPNERAIEPQIATIYR DFGLNDRQIAIIARAASKREYYCQTQRGNRLFELGLGPVALALCAASGKDDHKLIDAVLAEHGRAGFLAAWFDARSVAWA ADLLREGDVP >Mature_810_residues MMSLGEYRNRAALLSDYLPWAALVEKSVVLNKDGSFQRTAKIRGPDLDSATPAELVGVTGRLNNALRRLGSGWAVFVEAQ RVPATLYPESDFPDAASHMVDLERREAFEDEGAHFESRYFLTLVWLPPAESSGRAERFLYEGREREGPDPHGMLHAFVDR TDRMLALLEGFMPEAAWLDDGETLTYLHSTISTRQQRVRVPEIPMHLDALLVDQPLSGGLEPKLGDAYLKTLTITGFPSR TFPGILDDLNRLAMPYRWSTRAILLDKTDATKVLTRIRRQWFAKRKSIAAIVREVMTNEASALVDNDAANKAADADLALQ SLGADDVGQAYITATVTVWDGSAAIAAEKLRLVEKIIQGRDFTCMAESLNAVEAWLGSLPGHVYANVRQPPVSTLNLAHM IPLSAVWAGPEQDGHFKAPPLFYGKTAGATPFRFSLHVGDVGHTLIAGPTGAGKSVLLALMALQFRRYVGSQIFVFDFGG SMRAATLAMGGDWHDLGGGLTDEGDGDLAVALQPLAWIDDPDERKWATEWLGQILVGEGLTLTPEVKSHLWSALNSLASS PVHERTLSGLVALLQSNALKQALAPYCLGGPYGHLLDADTERLGDANVVVFETEGLIGSGAASSVLSYLFHRIEGRLDGR PTLLVIDEGWLVLDDGDFAGQLREWLKTLRKKNASVIFATQSLSDIANNAIAPAVVESCPTRIFLPNERAIEPQIATIYR DFGLNDRQIAIIARAASKREYYCQTQRGNRLFELGLGPVALALCAASGKDDHKLIDAVLAEHGRAGFLAAWFDARSVAWA ADLLREGDVP
Specific function: Required For The Assembly Of Mature F-Pilin Subunits Into Extended F Pili. [C]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 88365; Mature: 88365
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSLGEYRNRAALLSDYLPWAALVEKSVVLNKDGSFQRTAKIRGPDLDSATPAELVGVTG CCCCHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCCCCCHHHHHHHH RLNNALRRLGSGWAVFVEAQRVPATLYPESDFPDAASHMVDLERREAFEDEGAHFESRYF HHHHHHHHHCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE LTLVWLPPAESSGRAERFLYEGREREGPDPHGMLHAFVDRTDRMLALLEGFMPEAAWLDD EEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GETLTYLHSTISTRQQRVRVPEIPMHLDALLVDQPLSGGLEPKLGDAYLKTLTITGFPSR CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCCCCCCCEEEEEEEECCCCC TFPGILDDLNRLAMPYRWSTRAILLDKTDATKVLTRIRRQWFAKRKSIAAIVREVMTNEA CCCHHHHHHHHHCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SALVDNDAANKAADADLALQSLGADDVGQAYITATVTVWDGSAAIAAEKLRLVEKIIQGR HHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC DFTCMAESLNAVEAWLGSLPGHVYANVRQPPVSTLNLAHMIPLSAVWAGPEQDGHFKAPP CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHHEECCCCCCCCCCCCC LFYGKTAGATPFRFSLHVGDVGHTLIAGPTGAGKSVLLALMALQFRRYVGSQIFVFDFGG CEECCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCC SMRAATLAMGGDWHDLGGGLTDEGDGDLAVALQPLAWIDDPDERKWATEWLGQILVGEGL CCEEEEEEECCCHHHHCCCCCCCCCCCEEEEEECHHCCCCCCHHHHHHHHHHHHHHCCCC TLTPEVKSHLWSALNSLASSPVHERTLSGLVALLQSNALKQALAPYCLGGPYGHLLDADT EECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCH ERLGDANVVVFETEGLIGSGAASSVLSYLFHRIEGRLDGRPTLLVIDEGWLVLDDGDFAG HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCHHH QLREWLKTLRKKNASVIFATQSLSDIANNAIAPAVVESCPTRIFLPNERAIEPQIATIYR HHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCHHHHHHH DFGLNDRQIAIIARAASKREYYCQTQRGNRLFELGLGPVALALCAASGKDDHKLIDAVLA HCCCCCCEEEEEEECCCCCCEEEECCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHHH EHGRAGFLAAWFDARSVAWAADLLREGDVP HCCCCCEEEEEHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MMSLGEYRNRAALLSDYLPWAALVEKSVVLNKDGSFQRTAKIRGPDLDSATPAELVGVTG CCCCHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEECCCCCCCCCCCHHHHHHHH RLNNALRRLGSGWAVFVEAQRVPATLYPESDFPDAASHMVDLERREAFEDEGAHFESRYF HHHHHHHHHCCCEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE LTLVWLPPAESSGRAERFLYEGREREGPDPHGMLHAFVDRTDRMLALLEGFMPEAAWLDD EEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GETLTYLHSTISTRQQRVRVPEIPMHLDALLVDQPLSGGLEPKLGDAYLKTLTITGFPSR CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEECCCCCCCCCCCCCCCEEEEEEEECCCCC TFPGILDDLNRLAMPYRWSTRAILLDKTDATKVLTRIRRQWFAKRKSIAAIVREVMTNEA CCCHHHHHHHHHCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SALVDNDAANKAADADLALQSLGADDVGQAYITATVTVWDGSAAIAAEKLRLVEKIIQGR HHHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC DFTCMAESLNAVEAWLGSLPGHVYANVRQPPVSTLNLAHMIPLSAVWAGPEQDGHFKAPP CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHHEECCCCCCCCCCCCC LFYGKTAGATPFRFSLHVGDVGHTLIAGPTGAGKSVLLALMALQFRRYVGSQIFVFDFGG CEECCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCC SMRAATLAMGGDWHDLGGGLTDEGDGDLAVALQPLAWIDDPDERKWATEWLGQILVGEGL CCEEEEEEECCCHHHHCCCCCCCCCCCEEEEEECHHCCCCCCHHHHHHHHHHHHHHCCCC TLTPEVKSHLWSALNSLASSPVHERTLSGLVALLQSNALKQALAPYCLGGPYGHLLDADT EECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCH ERLGDANVVVFETEGLIGSGAASSVLSYLFHRIEGRLDGRPTLLVIDEGWLVLDDGDFAG HHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCCHHH QLREWLKTLRKKNASVIFATQSLSDIANNAIAPAVVESCPTRIFLPNERAIEPQIATIYR HHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCHHHHHHCCCEEECCCCCCCCCHHHHHHH DFGLNDRQIAIIARAASKREYYCQTQRGNRLFELGLGPVALALCAASGKDDHKLIDAVLA HCCCCCCEEEEEEECCCCCCEEEECCCCCEEEEECCCHHHHHHHHCCCCCHHHHHHHHHH EHGRAGFLAAWFDARSVAWAADLLREGDVP HCCCCCEEEEEHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]