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The map label for this gene is yybE [H]

Identifier: 162148512

GI number: 162148512

Start: 2828575

End: 2829489

Strand: Direct

Name: yybE [H]

Synonym: GDI_2734

Alternate gene names: 162148512

Gene position: 2828575-2829489 (Clockwise)

Preceding gene: 162148511

Following gene: 162148517

Centisome position: 71.72

GC content: 61.64

Gene sequence:

>915_bases
ATGAAACGGCCGCCGTTCGATCTGTGGCAGTTGCTGTGCGTGCGGGCAATCGCCGAGCACGGCAGTATCCACGGCGCGGC
GCGCTTCCTGAACACAAGGCAGTCGGCCGTCAGCCGGTCCCTGCACAACCTCGAGGAGCGGCTGAATGTCCCGTTGTTTC
TCCGCTCCCCCACTGGTGTCACACCAACGACGTTCGGTGAGGAATTCATCCGCTGGACCCAGACGATCCTGGACAACGTG
GCCGGCATGAACCTCCGCGCGCAGCGAACGGGCAAGGGCGAGACCGGCCAGATCTCGATCGGTATCCAGACCTGCGTCCT
GCCCGGGAGACTCTCGGCCTTCACGGCGGCGTTCCGTGCCAGACATCCCGATATCGCCTTTCGCTACTCCGAAGGCACCG
GCAAAAGACTGCTGCGGCGCCTCCAGCGCGGACAGATCGATTTCGCGGTCGTCACGCGCCGCAATCTGGTGCCTGCCTTG
CAGGTCACACCCCTGTGGAGCGACCGTATCGTGGCCGCCCTTCCCACCGGCCACCCTCTGGCGACGCAACAGGAGATTTT
ATGGCAGGACCTACGTCATGAAACATTCCTGATCGGGCGCGATAACGCCGGTCAGGACTTCAAGGAACTTATCCGGCGAA
AACTCGGTGAAACCGATTTCCATCCCAAAATCCAACATCATGATATCGGCAGCAATCGCGTCATCGCACTCGTCCAGAAC
CGCGAAGGCGTCGCCCTGCTCCCCGCCTCATGGCTGCCCCTGATCCACGATCAGTATGGGGAGGACGTCACGATCATGGA
GATCCGGGACGCCGACGGCTCCTCCCATCTGGAATTCGGGATCGTCTGGCGACCCGACAATCAAAATCCCTGTGCCCTGC
TCTTCGCCCGATATATCGAGGCCCACAGGTCATAA

Upstream 100 bases:

>100_bases
ACGTCGTCACCGATCGAGAATTGGTTACCGGCCAGCAGCCATTTTCCGATGATGTCTTTACAAGAACACTTTTGTTGGCT
TTGGCCCAAAAACGAAAAAC

Downstream 100 bases:

>100_bases
TGCTACTTTCCCGACGACGGTGCTTTTGCCTTTCTCCGTGCCCTGGCGAACCCCTTGTCCGACATCATGAACTGCCGGAG
CATGGGCGCGACCAGTCGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MKRPPFDLWQLLCVRAIAEHGSIHGAARFLNTRQSAVSRSLHNLEERLNVPLFLRSPTGVTPTTFGEEFIRWTQTILDNV
AGMNLRAQRTGKGETGQISIGIQTCVLPGRLSAFTAAFRARHPDIAFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLVPAL
QVTPLWSDRIVAALPTGHPLATQQEILWQDLRHETFLIGRDNAGQDFKELIRRKLGETDFHPKIQHHDIGSNRVIALVQN
REGVALLPASWLPLIHDQYGEDVTIMEIRDADGSSHLEFGIVWRPDNQNPCALLFARYIEAHRS

Sequences:

>Translated_304_residues
MKRPPFDLWQLLCVRAIAEHGSIHGAARFLNTRQSAVSRSLHNLEERLNVPLFLRSPTGVTPTTFGEEFIRWTQTILDNV
AGMNLRAQRTGKGETGQISIGIQTCVLPGRLSAFTAAFRARHPDIAFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLVPAL
QVTPLWSDRIVAALPTGHPLATQQEILWQDLRHETFLIGRDNAGQDFKELIRRKLGETDFHPKIQHHDIGSNRVIALVQN
REGVALLPASWLPLIHDQYGEDVTIMEIRDADGSSHLEFGIVWRPDNQNPCALLFARYIEAHRS
>Mature_304_residues
MKRPPFDLWQLLCVRAIAEHGSIHGAARFLNTRQSAVSRSLHNLEERLNVPLFLRSPTGVTPTTFGEEFIRWTQTILDNV
AGMNLRAQRTGKGETGQISIGIQTCVLPGRLSAFTAAFRARHPDIAFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLVPAL
QVTPLWSDRIVAALPTGHPLATQQEILWQDLRHETFLIGRDNAGQDFKELIRRKLGETDFHPKIQHHDIGSNRVIALVQN
REGVALLPASWLPLIHDQYGEDVTIMEIRDADGSSHLEFGIVWRPDNQNPCALLFARYIEAHRS

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=25.9109311740891, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI157672245, Length=235, Percent_Identity=25.1063829787234, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788887, Length=233, Percent_Identity=24.8927038626609, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=260, Percent_Identity=25, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787806, Length=252, Percent_Identity=26.5873015873016, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=136, Percent_Identity=31.6176470588235, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790262, Length=245, Percent_Identity=24.8979591836735, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=247, Percent_Identity=24.6963562753036, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34407; Mature: 34407

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPPFDLWQLLCVRAIAEHGSIHGAARFLNTRQSAVSRSLHNLEERLNVPLFLRSPTGV
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
TPTTFGEEFIRWTQTILDNVAGMNLRAQRTGKGETGQISIGIQTCVLPGRLSAFTAAFRA
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHC
RHPDIAFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLVPALQVTPLWSDRIVAALPTGHPL
CCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCEEEECCCCCCC
ATQQEILWQDLRHETFLIGRDNAGQDFKELIRRKLGETDFHPKIQHHDIGSNRVIALVQN
CHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEEEC
REGVALLPASWLPLIHDQYGEDVTIMEIRDADGSSHLEFGIVWRPDNQNPCALLFARYIE
CCCEEEECCCCCHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
AHRS
HHCC
>Mature Secondary Structure
MKRPPFDLWQLLCVRAIAEHGSIHGAARFLNTRQSAVSRSLHNLEERLNVPLFLRSPTGV
CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
TPTTFGEEFIRWTQTILDNVAGMNLRAQRTGKGETGQISIGIQTCVLPGRLSAFTAAFRA
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHC
RHPDIAFRYSEGTGKRLLRRLQRGQIDFAVVTRRNLVPALQVTPLWSDRIVAALPTGHPL
CCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCEEEECCCCCCC
ATQQEILWQDLRHETFLIGRDNAGQDFKELIRRKLGETDFHPKIQHHDIGSNRVIALVQN
CHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEEEEEC
REGVALLPASWLPLIHDQYGEDVTIMEIRDADGSSHLEFGIVWRPDNQNPCALLFARYIE
CCCEEEECCCCCHHHHHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
AHRS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]