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The map label for this gene is ydfH [C]

Identifier: 162148495

GI number: 162148495

Start: 2812973

End: 2813614

Strand: Direct

Name: ydfH [C]

Synonym: GDI_2716

Alternate gene names: 162148495

Gene position: 2812973-2813614 (Clockwise)

Preceding gene: 162148494

Following gene: 162148496

Centisome position: 71.32

GC content: 62.46

Gene sequence:

>642_bases
ATGACGGCCGAACGTGAACTCAATCTTGCCGAACACGCCTACGGGCAGATTCGGCGCATGATCCTGGAACGGGAACTGCC
CGGGGGCATGTCGGTCGTCGAAGGCCGCCTGGCGGACCATCTGGAAATTTCGCGCACTCCGGTTCGCGAAGCCGTGATGC
GCCTGGCCGCCGAGGGGCTGCTGACCAAACAGGGGTCGCGGTCATTCGCGGTCCGCCGCGTTTCGGCGGCCGAATTCTTT
CAATGCATGCATATCCGCGAGGTCCTGGAAGGCGAAGCGATCCAACTGGCATTCGGCAAGATCGATCGCAGCCGTGTCAC
CGAACTGCGCGAGAAGGTGATCGCGCTGGGCCAGTCCCCCGAACAGACTGCCGCCCAGTGGCAGCTGGACGACCAGATCC
ATCTGATGTTCGCCCGGGCATCAGGCAATATCGTTCTGACCAAGACCATAAACGAACTGCGAACGCTGACGCGACTGTGT
GAGGTCACTTATCCGCTCGGGCGCGTGCCGGCTTCGACCGTCGAACATCTGGCCATTCTGGACAGGCTGCTCGATGGCGA
TGCCGAGGCCACGAAGACCGCCATGCTGACCCACCTGCGCAACGTTGCGACAGACTGCATGGACATCCTTCGCGGCGGCT
AG

Upstream 100 bases:

>100_bases
ACCAGGAAGGCATCCGAAGTTCTTTCACCGGAGGAATGGCGGGAATTGTCACAGGCTCTAGAATACGCGCTGGTAATGGA
ACAGGAACGTGACTGACACC

Downstream 100 bases:

>100_bases
CGCTCTGCCCCGACCTTTCCCACGCCAGGAATCTTCCAATGACCTTCGACATCGTCATCCGCAACGGCACCATCGTGACC
GCCAGCGACGTGTTTACCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTAERELNLAEHAYGQIRRMILERELPGGMSVVEGRLADHLEISRTPVREAVMRLAAEGLLTKQGSRSFAVRRVSAAEFF
QCMHIREVLEGEAIQLAFGKIDRSRVTELREKVIALGQSPEQTAAQWQLDDQIHLMFARASGNIVLTKTINELRTLTRLC
EVTYPLGRVPASTVEHLAILDRLLDGDAEATKTAMLTHLRNVATDCMDILRGG

Sequences:

>Translated_213_residues
MTAERELNLAEHAYGQIRRMILERELPGGMSVVEGRLADHLEISRTPVREAVMRLAAEGLLTKQGSRSFAVRRVSAAEFF
QCMHIREVLEGEAIQLAFGKIDRSRVTELREKVIALGQSPEQTAAQWQLDDQIHLMFARASGNIVLTKTINELRTLTRLC
EVTYPLGRVPASTVEHLAILDRLLDGDAEATKTAMLTHLRNVATDCMDILRGG
>Mature_212_residues
TAERELNLAEHAYGQIRRMILERELPGGMSVVEGRLADHLEISRTPVREAVMRLAAEGLLTKQGSRSFAVRRVSAAEFFQ
CMHIREVLEGEAIQLAFGKIDRSRVTELREKVIALGQSPEQTAAQWQLDDQIHLMFARASGNIVLTKTINELRTLTRLCE
VTYPLGRVPASTVEHLAILDRLLDGDAEATKTAMLTHLRNVATDCMDILRGG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=214, Percent_Identity=27.1028037383178, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23774; Mature: 23643

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAERELNLAEHAYGQIRRMILERELPGGMSVVEGRLADHLEISRTPVREAVMRLAAEGL
CCCCHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LTKQGSRSFAVRRVSAAEFFQCMHIREVLEGEAIQLAFGKIDRSRVTELREKVIALGQSP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCC
EQTAAQWQLDDQIHLMFARASGNIVLTKTINELRTLTRLCEVTYPLGRVPASTVEHLAIL
HHHHHHHCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DRLLDGDAEATKTAMLTHLRNVATDCMDILRGG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAERELNLAEHAYGQIRRMILERELPGGMSVVEGRLADHLEISRTPVREAVMRLAAEGL
CCCHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LTKQGSRSFAVRRVSAAEFFQCMHIREVLEGEAIQLAFGKIDRSRVTELREKVIALGQSP
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCCCC
EQTAAQWQLDDQIHLMFARASGNIVLTKTINELRTLTRLCEVTYPLGRVPASTVEHLAIL
HHHHHHHCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
DRLLDGDAEATKTAMLTHLRNVATDCMDILRGG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]