| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is dcp [H]
Identifier: 162148366
GI number: 162148366
Start: 2676327
End: 2678480
Strand: Direct
Name: dcp [H]
Synonym: GDI_2583
Alternate gene names: 162148366
Gene position: 2676327-2678480 (Clockwise)
Preceding gene: 162148363
Following gene: 162148367
Centisome position: 67.86
GC content: 66.16
Gene sequence:
>2154_bases ATGCCACCGCAGAAGGTCTGGAAACGCATGAATCGTACCGTCTGGCTTCGTACCGTCGCCGCGTGCCTGGGTGGCTGGGC GGCCCTGTCCGGCCCGGCCCATGCCGCCGACAATCCGTTCCTGACCGCCAGCACGCTGCCGTTCCAGGCCCCGCGCTTCG ACCTGATCCATGACGGCGACTACCAGCCCGCGTTCGAGCAGGGCATGGCGCAGCAGATGGCCGAAATCCAGGCAATCGCG GATTATCCCGCGCCCCCGACCTTCGACAACACCATCGCGGCAATGGAACGTTCTGGCCGCGTGCTGGACCGGGTGTCCGA GACCTTCGACGGGGTGTACCAGGCCAACACCAATCCGGCGCTGGATGCCGTGCAAACGGCCATCGCGCCGAAACTGGCCC AGCATCAGGATGCGATCTACCTGAATCCCGGACTGTTCGCCCGGGTCCGCACGCTGTACGACGCGCGCGCCACGCTGCAC CTGACGGAAGAGCAGGCGCAGCTCCTGACGGTCTATTATCAGCAATTCATCCATGCCGGCGCGCAATTGTCCGCCGCGGA CCAGGCGACGCTGCGCGGATTGAACACGCACCTGTCGCAACTGGAAACCCGCTTCCAGCAGACCTTGCTGACAGCGACCC GGCAGGGCGCGCTGGTCGTCTGGCGCCCCGCCGCCCTGCACGGGCTGGACCGGGCCGCACTGGATGCCGCCGCCGAAGCC GCCAGGGGGCGCGGGCTGACGGACGCATGGGCGCTGCCGCTGCAGAACACGACGCAGCAGCCGGACCTGCAATCCCTGAC CGATCGCGCCACGCGCCAGGCGCTGTTCGCCGATAGCTGGCTGCGCGCCGAACACGGCGACAGCGGGGACACGCGCGCCG TCATCGCCGAACTGGCGCAGTTGCGCGCGCGCAAGGCAGCACTGCTGGGCTATCCCGATTACGCGTCATACGTGCTGTAT GACCAGATGGCCGATACCCCTGCGAAGGTGCAGCGTTTCATCGCGCAGCTCGTGCCCGCGACGCTGGCCGAACAGAAGCG CGAAATCGCGGATATCCGCGCCGCCATCCATGTGGACGGCCAGACCTTCCAGCCCCAGCCGTGGGACTGGACCCATTACG CCGAACAGGTGCGCAAGGCGCGCTACGACCTGGACCAGAACCAGGTCAAACCCTATTTCGAACTGGACAGGGTGCTGCGC GACGGCGTGTTCTTCGCCGCCAACCGGCTGTACGGGCTTACATTCACCGAACGCAAGGACATCCCCGTCTACAACCCCGA CGTACGGGTGTTCCAGGTCACCGACAAGGACGGGTCGCCGCTGGCGCTGATCTATTTCGATTACTTCAAGCGCGACAACA AGAACGGCGGCGCCTGGATGTCGAATTTCGTGGGGCAGTCGCACCTGCTGGGCACGAAGCCGGTGGTCTATAACGTCGCG AACTTCACCAAGCCGGCGCCGGGGCAACCCGCCCTGATCAGTTTCGACGACGTCACCACGATGTTCCACGAATTCGGCCA TGCGCTGCACGGCATGTTCGCCGACCAGACCTATCCCACCCTGTCCGGCACCGCCGTGGCCCGCGATTTCGTCGAATTCC CGTCCCAGTTCAACGAACATTGGGCGCTGGACCCGATCGTCTTCGCCCATTACGCCAGACAGTACCAGACCGGCGCCGCG ATGCCGCAGCCCCTGGTCGACAAGATCAGGAAGGCCGCGCGCTTCGACCAGGGCTACGCGCTGGGCGAGGTCATCGCCGC CGCCAAGCTGGACATGGACTGGCACATGCTGCCCGCCGGCGCCCCGCGCCAGGACGTCGACCGGTTCGAAGCGGACTCGC TGGCCCGATCCGGACTGGATACCACGGACGTTCCGCCCCGCTACCGGTCCAGCTATTTCCTGCACATCTGGGCCAACGGC TATGCCGCCGGCTATTATGCCTATCTGTGGACCGAGATGCTGGACGACGCGGCGTTTTCCTGGTTCCGCGCCCACGGCGG GCTGACGCGCGAAAACGGGCAGCGCTTCCGCGACATGATCCTGTCACGCGGGCATACGATGGCGTACGGCCCGATGTTCC GCGCCTTCTACGGCCAGGACCCCGATATCACCCCGATGCTGCGACATCGCGGGCTGGTCCCGGGCCAGGAGTGA
Upstream 100 bases:
>100_bases TATTTTGCAAATCCACCACGCCATCCACGGCCTTAAGCGGCCTGCCGGATCGTTTCGGGTCGGGTGGATTTTCATGCCCC GTTGGCCCATCCTGCGCGCC
Downstream 100 bases:
>100_bases CCCGCACGCGTTGAGGCAAATCATTGGCCAGGCGCGACGGATGGCGCACCATGGCCCCGATTTTCGACAAGGAGAGACCA CCATGGCCCGCGTTTCCGGA
Product: peptidyl-dipeptidase dcp
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 717; Mature: 716
Protein sequence:
>717_residues MPPQKVWKRMNRTVWLRTVAACLGGWAALSGPAHAADNPFLTASTLPFQAPRFDLIHDGDYQPAFEQGMAQQMAEIQAIA DYPAPPTFDNTIAAMERSGRVLDRVSETFDGVYQANTNPALDAVQTAIAPKLAQHQDAIYLNPGLFARVRTLYDARATLH LTEEQAQLLTVYYQQFIHAGAQLSAADQATLRGLNTHLSQLETRFQQTLLTATRQGALVVWRPAALHGLDRAALDAAAEA ARGRGLTDAWALPLQNTTQQPDLQSLTDRATRQALFADSWLRAEHGDSGDTRAVIAELAQLRARKAALLGYPDYASYVLY DQMADTPAKVQRFIAQLVPATLAEQKREIADIRAAIHVDGQTFQPQPWDWTHYAEQVRKARYDLDQNQVKPYFELDRVLR DGVFFAANRLYGLTFTERKDIPVYNPDVRVFQVTDKDGSPLALIYFDYFKRDNKNGGAWMSNFVGQSHLLGTKPVVYNVA NFTKPAPGQPALISFDDVTTMFHEFGHALHGMFADQTYPTLSGTAVARDFVEFPSQFNEHWALDPIVFAHYARQYQTGAA MPQPLVDKIRKAARFDQGYALGEVIAAAKLDMDWHMLPAGAPRQDVDRFEADSLARSGLDTTDVPPRYRSSYFLHIWANG YAAGYYAYLWTEMLDDAAFSWFRAHGGLTRENGQRFRDMILSRGHTMAYGPMFRAFYGQDPDITPMLRHRGLVPGQE
Sequences:
>Translated_717_residues MPPQKVWKRMNRTVWLRTVAACLGGWAALSGPAHAADNPFLTASTLPFQAPRFDLIHDGDYQPAFEQGMAQQMAEIQAIA DYPAPPTFDNTIAAMERSGRVLDRVSETFDGVYQANTNPALDAVQTAIAPKLAQHQDAIYLNPGLFARVRTLYDARATLH LTEEQAQLLTVYYQQFIHAGAQLSAADQATLRGLNTHLSQLETRFQQTLLTATRQGALVVWRPAALHGLDRAALDAAAEA ARGRGLTDAWALPLQNTTQQPDLQSLTDRATRQALFADSWLRAEHGDSGDTRAVIAELAQLRARKAALLGYPDYASYVLY DQMADTPAKVQRFIAQLVPATLAEQKREIADIRAAIHVDGQTFQPQPWDWTHYAEQVRKARYDLDQNQVKPYFELDRVLR DGVFFAANRLYGLTFTERKDIPVYNPDVRVFQVTDKDGSPLALIYFDYFKRDNKNGGAWMSNFVGQSHLLGTKPVVYNVA NFTKPAPGQPALISFDDVTTMFHEFGHALHGMFADQTYPTLSGTAVARDFVEFPSQFNEHWALDPIVFAHYARQYQTGAA MPQPLVDKIRKAARFDQGYALGEVIAAAKLDMDWHMLPAGAPRQDVDRFEADSLARSGLDTTDVPPRYRSSYFLHIWANG YAAGYYAYLWTEMLDDAAFSWFRAHGGLTRENGQRFRDMILSRGHTMAYGPMFRAFYGQDPDITPMLRHRGLVPGQE >Mature_716_residues PPQKVWKRMNRTVWLRTVAACLGGWAALSGPAHAADNPFLTASTLPFQAPRFDLIHDGDYQPAFEQGMAQQMAEIQAIAD YPAPPTFDNTIAAMERSGRVLDRVSETFDGVYQANTNPALDAVQTAIAPKLAQHQDAIYLNPGLFARVRTLYDARATLHL TEEQAQLLTVYYQQFIHAGAQLSAADQATLRGLNTHLSQLETRFQQTLLTATRQGALVVWRPAALHGLDRAALDAAAEAA RGRGLTDAWALPLQNTTQQPDLQSLTDRATRQALFADSWLRAEHGDSGDTRAVIAELAQLRARKAALLGYPDYASYVLYD QMADTPAKVQRFIAQLVPATLAEQKREIADIRAAIHVDGQTFQPQPWDWTHYAEQVRKARYDLDQNQVKPYFELDRVLRD GVFFAANRLYGLTFTERKDIPVYNPDVRVFQVTDKDGSPLALIYFDYFKRDNKNGGAWMSNFVGQSHLLGTKPVVYNVAN FTKPAPGQPALISFDDVTTMFHEFGHALHGMFADQTYPTLSGTAVARDFVEFPSQFNEHWALDPIVFAHYARQYQTGAAM PQPLVDKIRKAARFDQGYALGEVIAAAKLDMDWHMLPAGAPRQDVDRFEADSLARSGLDTTDVPPRYRSSYFLHIWANGY AAGYYAYLWTEMLDDAAFSWFRAHGGLTRENGQRFRDMILSRGHTMAYGPMFRAFYGQDPDITPMLRHRGLVPGQE
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI4507491, Length=678, Percent_Identity=28.023598820059, Blast_Score=209, Evalue=9e-54, Organism=Homo sapiens, GI14149738, Length=617, Percent_Identity=25.2836304700162, Blast_Score=176, Evalue=9e-44, Organism=Homo sapiens, GI156105687, Length=406, Percent_Identity=25.3694581280788, Blast_Score=132, Evalue=9e-31, Organism=Escherichia coli, GI1787819, Length=675, Percent_Identity=52.7407407407407, Blast_Score=699, Evalue=0.0, Organism=Escherichia coli, GI1789913, Length=686, Percent_Identity=31.0495626822157, Blast_Score=313, Evalue=3e-86, Organism=Saccharomyces cerevisiae, GI6319793, Length=601, Percent_Identity=25.1247920133111, Blast_Score=173, Evalue=8e-44, Organism=Saccharomyces cerevisiae, GI6322715, Length=471, Percent_Identity=23.7791932059448, Blast_Score=107, Evalue=9e-24, Organism=Drosophila melanogaster, GI21356111, Length=544, Percent_Identity=23.1617647058824, Blast_Score=143, Evalue=4e-34, Organism=Drosophila melanogaster, GI20129717, Length=404, Percent_Identity=25.990099009901, Blast_Score=113, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 80393; Mature: 80262
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPQKVWKRMNRTVWLRTVAACLGGWAALSGPAHAADNPFLTASTLPFQAPRFDLIHDGD CCHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEECCC YQPAFEQGMAQQMAEIQAIADYPAPPTFDNTIAAMERSGRVLDRVSETFDGVYQANTNPA CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCEECCCCHH LDAVQTAIAPKLAQHQDAIYLNPGLFARVRTLYDARATLHLTEEQAQLLTVYYQQFIHAG HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCC AQLSAADQATLRGLNTHLSQLETRFQQTLLTATRQGALVVWRPAALHGLDRAALDAAAEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHHH ARGRGLTDAWALPLQNTTQQPDLQSLTDRATRQALFADSWLRAEHGDSGDTRAVIAELAQ HHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LRARKAALLGYPDYASYVLYDQMADTPAKVQRFIAQLVPATLAEQKREIADIRAAIHVDG HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC QTFQPQPWDWTHYAEQVRKARYDLDQNQVKPYFELDRVLRDGVFFAANRLYGLTFTERKD CCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCHHHHHHHEEEEEECCCCC IPVYNPDVRVFQVTDKDGSPLALIYFDYFKRDNKNGGAWMSNFVGQSHLLGTKPVVYNVA CCCCCCCEEEEEEECCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCCHHCCCCCCCEEEHH NFTKPAPGQPALISFDDVTTMFHEFGHALHGMFADQTYPTLSGTAVARDFVEFPSQFNEH HCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC WALDPIVFAHYARQYQTGAAMPQPLVDKIRKAARFDQGYALGEVIAAAKLDMDWHMLPAG CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCC APRQDVDRFEADSLARSGLDTTDVPPRYRSSYFLHIWANGYAAGYYAYLWTEMLDDAAFS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH WFRAHGGLTRENGQRFRDMILSRGHTMAYGPMFRAFYGQDPDITPMLRHRGLVPGQE HHHHHCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCHHHHHCCCCCCCC >Mature Secondary Structure PPQKVWKRMNRTVWLRTVAACLGGWAALSGPAHAADNPFLTASTLPFQAPRFDLIHDGD CHHHHHHHHCHHHHHHHHHHHHCCHHHCCCCCCCCCCCEEEECCCCCCCCCCCCEECCC YQPAFEQGMAQQMAEIQAIADYPAPPTFDNTIAAMERSGRVLDRVSETFDGVYQANTNPA CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCEECCCCHH LDAVQTAIAPKLAQHQDAIYLNPGLFARVRTLYDARATLHLTEEQAQLLTVYYQQFIHAG HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCC AQLSAADQATLRGLNTHLSQLETRFQQTLLTATRQGALVVWRPAALHGLDRAALDAAAEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHHH ARGRGLTDAWALPLQNTTQQPDLQSLTDRATRQALFADSWLRAEHGDSGDTRAVIAELAQ HHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LRARKAALLGYPDYASYVLYDQMADTPAKVQRFIAQLVPATLAEQKREIADIRAAIHVDG HHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC QTFQPQPWDWTHYAEQVRKARYDLDQNQVKPYFELDRVLRDGVFFAANRLYGLTFTERKD CCCCCCCCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHCCHHHHHHHEEEEEECCCCC IPVYNPDVRVFQVTDKDGSPLALIYFDYFKRDNKNGGAWMSNFVGQSHLLGTKPVVYNVA CCCCCCCEEEEEEECCCCCCEEEEEEEHHHCCCCCCCHHHHHHCCCHHCCCCCCCEEEHH NFTKPAPGQPALISFDDVTTMFHEFGHALHGMFADQTYPTLSGTAVARDFVEFPSQFNEH HCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC WALDPIVFAHYARQYQTGAAMPQPLVDKIRKAARFDQGYALGEVIAAAKLDMDWHMLPAG CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCC APRQDVDRFEADSLARSGLDTTDVPPRYRSSYFLHIWANGYAAGYYAYLWTEMLDDAAFS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH WFRAHGGLTRENGQRFRDMILSRGHTMAYGPMFRAFYGQDPDITPMLRHRGLVPGQE HHHHHCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]