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The map label for this gene is yciR [C]

Identifier: 162148059

GI number: 162148059

Start: 2334965

End: 2337067

Strand: Reverse

Name: yciR [C]

Synonym: GDI_2275

Alternate gene names: 162148059

Gene position: 2337067-2334965 (Counterclockwise)

Preceding gene: 162148060

Following gene: 162148058

Centisome position: 59.25

GC content: 65.81

Gene sequence:

>2103_bases
ATGCGGGATCTTTCCACGCCAGGCCCTACCGTTGGCCCGTCGGACAAGGGCGAACGGATCTTCGAACTGTTCCGGGACGA
CCCGGAATTGATGCTGGTCGCCGTCGTCGATGAAGGCGGCGCGCCGATCGGGCTGGTGGAACGGCAGGCCTTTTTCGCCA
AGGTTTCGGGGCAGTTCGGGCACGCGCTGTTCGCCGGGCGCCCCGTGGCCCTGCTTATGGACGACAGGCCCGTGATCGTG
GATGCCGCGGTCTCGTCGACGGATTTCACGTCCATGACGATCACGGCGCAGTCGTCGGACGTGCTGCGCGGCTACATCGT
CGTTGCCGGGGGGCGGTATCTGGGCACGGGAACGGCCCTGGACCTGATCAATGCCTCGCATTCCAATGCGGTCGCGTCCG
CCGCGAACCTGCATGAAACGGCCGAGGAATTGCGCAAGGCGAACAGGAAGATCCTGCGCGACAAGCTGTTCATGGATACG
ATCGTCGAAAATATCCCCTCGGCCCTCGTGGTCAGGTCGGTGCGCGACGACCGGCTGGTCCTGATCAACCGCGCGGCCGA
ACTGATGACCGGCCGCGAGCGGAGCGAACTGGTCGAGCACACCGCCGCCGACGCCTTCACCGAAACCGAGATCGGCCACG
CCCTGGTGCATCCCGAGGGCACGCGGCGGGAGGGCGTTTCCGAGAGCCTGCTGCGCAACCGCGCGGGGGACATGCGCGCG
GTCGCGACGCGCTACGTCACGATCGCGGACGAACGCGGCGACGCGCGCTGGGAACTGTGCGTGGCCGATGACGTCACCGA
ACGGCGGCAGGCCCGCCAGCAGGTCGAACGGCTGGCGCATTACGACCCGCTGACCGGACTGGCCAACCGCGCCCTGTTCG
GTGCGCGGCTCGACGGCGTGTGCGTGGCGGGGCACGAGGCCATCCTATTGTGCATCGACCTGGATTATTTCAAGACGGTC
AACGACCTCTACGGTCACGCGGCGGGCGATGCCCTGCTTCGCCTGGTGGCCGACCGCTTGCGGGCCTGCAGCCGTCCCGA
CGACCTGATCGCGCGCCTGGGCGGCGACGAATTCGCCATCATCTGGCCCAACGTGCCGGAAAAGGAGGAACTCGCCCATC
GCGCGGGTGAAATCGTCGAGACGATCAGCCGGCCCTACGTCATCGACGGCCAGCACGTCGCGATCGGCGCCAGCATCGGA
TCGGCATCCTATCCGGCGGATGCGGGTTCATCCGATCTGCTGCGGCAACATGCCGATATCGCGCTGTACAAGGCCAAGGC
GCTGGGGCGGAACTGCTTTCATTCGTTCGATGCCGGCCTCAGCTACGAAATGCGCAACAAGGCCCGGCTGGGCGACGAGC
TGCGCGCGGCCATCGGAAGCAGCCAGATCTGCCTGCATTTCCAGCCGCTTTACACCATGCCCGACAACCAGATCGCCGCC
TGCGAGGCCCTGGTGCGCTGGAACCACCCCGTACGCGGGATGATCCCGCCGGATCAGTTCATCGGCCTGGCCGAGGAAAA
CGGCCTGATCCACGAACTGGGCGAGTGGGTCCTGCGTGCCGCGTGCCGCGAGGCCGTCTGCTGGCCGCCGCACGTCAAGG
TCGCCGTCAATGTTTCGCCGGTCCAGTTCCGCAATTCCCGGTTCATGGCCATCGTGCAGTCGGCCCTGATGGAAGCGGGC
CTCGTGCCCCACCGGCTGGAAGTCGAGATCACGGAAAATATCTTCGTGCAGAACAGCGCGGTCAACCGCGACATCCTGCG
ACAGCTCGCCGACATGGGATGCAGCGTCGTCCTGGACGATTTCGGAACCGGCTATTCCGCCCTCAGCTACCTGCGGCTGT
TCTCGTTCCAGAAAATCAAGATCGATCGTTCCTTCGTCAAGGAATTGCCGGAAAAGAGCGCATCGGGCATCATCCAGGCC
ATTGTCAGCCTGGCCCAGAGCATGGACATTCCCACCACCGCCGAGGGCGTGGAAACCCAGGAACAGTGGGCGAGGCTGCA
CGCCATGGGATGCAGCGAGGCGCAGGGTTTCCTGCTGGGGCGGCCCGAACCGGTCGCCGCCATCCGCGAGCGCCTCGGCG
TCAGGGACGTCGTCATGTCCTGA

Upstream 100 bases:

>100_bases
TACCGTTAATAAAATAAATGTGTTGTTTTTTTAGACGAGTGGATGAAACTGGCTTGTGCGGGAAGCAGAAATGAAACATT
CCGCTTCGTCATCCCTTTTG

Downstream 100 bases:

>100_bases
CGGATGACCGGCGATTCGCGGGTGAAATCGCGCAACCGCTGGACAGTTGGGCCAGAGTGCGGGAAAGCCCTCGATCATGA
GTGTTGTGACCCTGACCGTC

Product: GGDEF family signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 700; Mature: 700

Protein sequence:

>700_residues
MRDLSTPGPTVGPSDKGERIFELFRDDPELMLVAVVDEGGAPIGLVERQAFFAKVSGQFGHALFAGRPVALLMDDRPVIV
DAAVSSTDFTSMTITAQSSDVLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHETAEELRKANRKILRDKLFMDT
IVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALVHPEGTRREGVSESLLRNRAGDMRA
VATRYVTIADERGDARWELCVADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVAGHEAILLCIDLDYFKTV
NDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRAGEIVETISRPYVIDGQHVAIGASIG
SASYPADAGSSDLLRQHADIALYKAKALGRNCFHSFDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAA
CEALVRWNHPVRGMIPPDQFIGLAEENGLIHELGEWVLRAACREAVCWPPHVKVAVNVSPVQFRNSRFMAIVQSALMEAG
LVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSYLRLFSFQKIKIDRSFVKELPEKSASGIIQA
IVSLAQSMDIPTTAEGVETQEQWARLHAMGCSEAQGFLLGRPEPVAAIRERLGVRDVVMS

Sequences:

>Translated_700_residues
MRDLSTPGPTVGPSDKGERIFELFRDDPELMLVAVVDEGGAPIGLVERQAFFAKVSGQFGHALFAGRPVALLMDDRPVIV
DAAVSSTDFTSMTITAQSSDVLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHETAEELRKANRKILRDKLFMDT
IVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALVHPEGTRREGVSESLLRNRAGDMRA
VATRYVTIADERGDARWELCVADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVAGHEAILLCIDLDYFKTV
NDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRAGEIVETISRPYVIDGQHVAIGASIG
SASYPADAGSSDLLRQHADIALYKAKALGRNCFHSFDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAA
CEALVRWNHPVRGMIPPDQFIGLAEENGLIHELGEWVLRAACREAVCWPPHVKVAVNVSPVQFRNSRFMAIVQSALMEAG
LVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSYLRLFSFQKIKIDRSFVKELPEKSASGIIQA
IVSLAQSMDIPTTAEGVETQEQWARLHAMGCSEAQGFLLGRPEPVAAIRERLGVRDVVMS
>Mature_700_residues
MRDLSTPGPTVGPSDKGERIFELFRDDPELMLVAVVDEGGAPIGLVERQAFFAKVSGQFGHALFAGRPVALLMDDRPVIV
DAAVSSTDFTSMTITAQSSDVLRGYIVVAGGRYLGTGTALDLINASHSNAVASAANLHETAEELRKANRKILRDKLFMDT
IVENIPSALVVRSVRDDRLVLINRAAELMTGRERSELVEHTAADAFTETEIGHALVHPEGTRREGVSESLLRNRAGDMRA
VATRYVTIADERGDARWELCVADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGVCVAGHEAILLCIDLDYFKTV
NDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAIIWPNVPEKEELAHRAGEIVETISRPYVIDGQHVAIGASIG
SASYPADAGSSDLLRQHADIALYKAKALGRNCFHSFDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAA
CEALVRWNHPVRGMIPPDQFIGLAEENGLIHELGEWVLRAACREAVCWPPHVKVAVNVSPVQFRNSRFMAIVQSALMEAG
LVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDDFGTGYSALSYLRLFSFQKIKIDRSFVKELPEKSASGIIQA
IVSLAQSMDIPTTAEGVETQEQWARLHAMGCSEAQGFLLGRPEPVAAIRERLGVRDVVMS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=557, Percent_Identity=33.0341113105925, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI87081921, Length=428, Percent_Identity=33.6448598130841, Blast_Score=236, Evalue=5e-63,
Organism=Escherichia coli, GI226510982, Length=429, Percent_Identity=27.7389277389277, Blast_Score=156, Evalue=5e-39,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=33.3333333333333, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=30.5555555555556, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=30.5084745762712, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1787055, Length=257, Percent_Identity=31.9066147859922, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1786507, Length=222, Percent_Identity=35.1351351351351, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87081980, Length=236, Percent_Identity=33.0508474576271, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081881, Length=303, Percent_Identity=30.6930693069307, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=33.4677419354839, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1788849, Length=448, Percent_Identity=23.6607142857143, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=299, Percent_Identity=30.4347826086957, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082096, Length=413, Percent_Identity=24.2130750605327, Blast_Score=93, Evalue=5e-20,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=34.7305389221557, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788956, Length=198, Percent_Identity=32.3232323232323, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=30.8139534883721, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=35.7575757575758, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=189, Percent_Identity=31.2169312169312, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=32.9341317365269, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=36.3636363636364, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787816, Length=155, Percent_Identity=33.5483870967742, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30.5882352941176, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=135, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 76672; Mature: 76672

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLSTPGPTVGPSDKGERIFELFRDDPELMLVAVVDEGGAPIGLVERQAFFAKVSGQFG
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHCCCCC
HALFAGRPVALLMDDRPVIVDAAVSSTDFTSMTITAQSSDVLRGYIVVAGGRYLGTGTAL
CHHHCCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCEEECCCHHH
DLINASHSNAVASAANLHETAEELRKANRKILRDKLFMDTIVENIPSALVVRSVRDDRLV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE
LINRAAELMTGRERSELVEHTAADAFTETEIGHALVHPEGTRREGVSESLLRNRAGDMRA
EEEHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCHHH
VATRYVTIADERGDARWELCVADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGV
HHHEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE
CVAGHEAILLCIDLDYFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAI
EEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEE
IWPNVPEKEELAHRAGEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADI
ECCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
ALYKAKALGRNCFHSFDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEEEEEEECCCCHHHH
CEALVRWNHPVRGMIPPDQFIGLAEENGLIHELGEWVLRAACREAVCWPPHVKVAVNVSP
HHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
VQFRNSRFMAIVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDD
EEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHCCCEEEEEC
FGTGYSALSYLRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQ
CCCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
EQWARLHAMGCSEAQGFLLGRPEPVAAIRERLGVRDVVMS
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MRDLSTPGPTVGPSDKGERIFELFRDDPELMLVAVVDEGGAPIGLVERQAFFAKVSGQFG
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHCCCCC
HALFAGRPVALLMDDRPVIVDAAVSSTDFTSMTITAQSSDVLRGYIVVAGGRYLGTGTAL
CHHHCCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCEEECCCHHH
DLINASHSNAVASAANLHETAEELRKANRKILRDKLFMDTIVENIPSALVVRSVRDDRLV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE
LINRAAELMTGRERSELVEHTAADAFTETEIGHALVHPEGTRREGVSESLLRNRAGDMRA
EEEHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCHHH
VATRYVTIADERGDARWELCVADDVTERRQARQQVERLAHYDPLTGLANRALFGARLDGV
HHHEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCE
CVAGHEAILLCIDLDYFKTVNDLYGHAAGDALLRLVADRLRACSRPDDLIARLGGDEFAI
EEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEE
IWPNVPEKEELAHRAGEIVETISRPYVIDGQHVAIGASIGSASYPADAGSSDLLRQHADI
ECCCCCCHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
ALYKAKALGRNCFHSFDAGLSYEMRNKARLGDELRAAIGSSQICLHFQPLYTMPDNQIAA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCEEEEEEEEEEECCCCHHHH
CEALVRWNHPVRGMIPPDQFIGLAEENGLIHELGEWVLRAACREAVCWPPHVKVAVNVSP
HHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
VQFRNSRFMAIVQSALMEAGLVPHRLEVEITENIFVQNSAVNRDILRQLADMGCSVVLDD
EEECCCHHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHHCCCEEEEEC
FGTGYSALSYLRLFSFQKIKIDRSFVKELPEKSASGIIQAIVSLAQSMDIPTTAEGVETQ
CCCHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
EQWARLHAMGCSEAQGFLLGRPEPVAAIRERLGVRDVVMS
HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]