| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is alaS [H]
Identifier: 162147971
GI number: 162147971
Start: 2238445
End: 2241090
Strand: Direct
Name: alaS [H]
Synonym: GDI_2187
Alternate gene names: 162147971
Gene position: 2238445-2241090 (Clockwise)
Preceding gene: 162147969
Following gene: 162147972
Centisome position: 56.75
GC content: 69.58
Gene sequence:
>2646_bases ATGTCCACAACAAACGATATCCGCGCGGCCTTTCTCGATTATTTCGCGGCGAACGGTCACCAGATCGTCCCGTCCTCGTC GCTGGTGCCGCGCAACGACCCGACCCTGCTGTTTACCAACGCGGGCATGGTCCAGTTCAAGAACGTCTTCACCGGCCAGG AGACACGTCCCTATTCCCGCGCCACGACGGCGCAGAAGGTCGTGCGGGCAGGCGGCAAGCACAACGACCTGGACAATGTG GGCTATACCGCCCGCCATCACACGTTCTTCGAGATGATGGGCAATTTCTCGTTCGGCGATTATTTCAAGGCCGATGCGAT CGAATTCGCCTGGACCCTGATCACCCGCAATTTCGGCCTGCCGCGCGACCGCCTGCTGGCCACCGTCTACGCGGATGACG AGGAAGCAGCCGACCTGTGGCGCAAGGTCGCCGGACTGCCGGACGAGCGGATCATCCGCATCGGCACCGCCGACAATTTC TGGCGGATGGGCGACACCGGCCCGTGCGGTCCATGTTCGGAAATCTTCTTCGACCATGGGCCCGACGTGCCGGGCGGCCC GCCCGGATCGCCGGACGAGGACGGCGACCGGTTCGTCGAGATCTGGAACCTGGTGTTCATGCAGTTCTTCGAGGACCCGC CGGGCGTGCGCTCGCCGCTGCCGCGTCCGTCCATCGATACCGGCATGGGCCTGGAACGCTTCGCCGCCATCATGCAGGGC AAGCGCGACAATTACGATACGGACACGATGCGCGCGCTGATCCTTGCGTCGGCCGAGGCGACGGGCCAGGACCCGGACGG CCCGTTCCGCGCCAGCCACCGCGTGGTGGCCGACCATCTGCGCTCGACCTCGTTCCTGATCGCGGACGGGGTCCTGCCGT CCAAGGACGGGCGGGGCTATGTCCTGCGCCGCATCATGCGCCGCGCCATGCGCCACCTGCACATGATGGGCACCAGGGAA ACGGTGTTCCACCGGCTGGTGCCCGCGCTGGTGCGTCAGATGGGCGCCGCCTATCCCGAACTGGTCCAGGCCGAGGCGCT GATCCGCGAGACGATGCGCGGCGAGGAGGAACGGTTCAAGGCGATGCTGGATCGCGGCCTGGCGCTGCTGGCCGACGAGA CCGCGCGCCTGGGTGACGGCCAGCCCCTGCCCGGCGACGTGGCGTTCAAGCTGTACGACACGTTCGGCTTCCCGCTGGAC CTGACGCAGGACGCGCTGCGCGGCAGCAGCCATGACGTGGACGTCACGGGCTTCGACCGCGCGATGCAGGTGCAGCGCGA GCGCGCCCGCGCGGCGTGGTCCGGATCGGGCGACAGCGCGACCGAGACCGTGTGGTTCGAGGCCCGCGACCGCTTCGGCG CCAGCGAGTTCCTGGGCTATGCGACCGAACAGGCGGATGCCGAGATCCAGGCCATCGTCACCGACGGCCGGTCGGTGACC GAGGCCCCGGCGGGGACCGAAATCGCGCTGCTGCTGAACCAGACGCCGTTCTATGGCGAAAGCGGCGGGCAGGTCGGTGA TACCGGGCTGATCACAGCACCCGGCCTGCGCATCGCGGTGACCGACACGCAGAAGCGCCTGGGCGACCTGATGGTCCATT ACGGCACGGTGGTCGAGGGCACGGTCCGGGTCGGCCAGGCCGTGACCGCCACGGTCGATCACGACCGGCGCAGCGCCATC CGCGCGCACCATTCCGCCACCCACCTGCTGCACGAGGCCCTGCGCCGCCGGCTGGGGGCGCATGTCACGCAGAAGGGCAG CCTGAACGCGCCCGACCGCCTGCGCTTCGACATCAGCCAGCCCCGGCCCCTGACGCCCGAGGAAATCGCGGATGTCGAGG CCGAGGTGAATGCCCGCATCCGCGAGAACAGCCCCGTCGTCACGCGCCCCATGTCGCAGGAAGAAGCCGTGGCGCAGGGC GCGATGGCCCTGTTCGGCGAGAAATATGGCGACGAGGTGCGGGTGGTGTTCATGGGCGCGCCCGAGGACGACCGTCCGGC GTGGTCCATCGAACTGTGCGGCGGCACGCATGTGAACCGCACCGGCGATATCGGCCTGTTCCGCATCACGTCCGAGGCCG GGGTATCGGCCGGTATCCGCCGGATCGAGGCTGTGACCGGGAAGTCCGCCGAACAGGCGGCGGTCGCGACCGAGCAGCGC CTGGGGCAGATGGCCGCCATGCTGCGCGTCTCGGCGGCCGAGGCCCCGGAGCGGCTGGCGGTGATCCTGGACGAGCGCAA GGTCATGGAGCGCCAGATTTCCGACCTGCAGCGCAAGCTGGCCAGCGGCGGCAGTGACGGCGCGCAGGCCGAGACGATCA ACGGGATCGGCTTCGTGGCCCGCGACGTGGGCGACCTGCCGGCGCGCGAATTGAAACCCCTGGCCGATTCGCTGCGCCAG CAGGTCGGCTCGGGCGTGGTGGCGCTGGTTTCCACCGCCGAAGGCAAGGGAAGCGTGGTGGTGGCGGTGACCAGCGACCT GACCGACCGGCTGGACGCGGTCGAACTGGTGCGTCTGGCCAGCGCCGCCATGGGCGGCAAGGGCGGCGGCGGACGCCGCG ACATGGCCCAGGCCGGCGGCCCCGATATCGCCCGGTCCGAAGCGGCGCTGGCGGCAGTGCGCGGCGCGGTCGCGGCGGCC GCCTGA
Upstream 100 bases:
>100_bases TGGCAAGGCTGCGCTCTTCCTGCCGGGCACGCCGTGCGCTAGGTGATGGGATATCCGAGCTTTCCGGCCTTCGTCATTTC AGGATCGTCAGTCTTCCGCC
Downstream 100 bases:
>100_bases CGGGCCGCGCTGCCAACCGCCCCCCGGCCATGACCAGGGCCGGGGGCGCGAGGCCATGTCCGCGAAGCATGTCTGGTCGC TGACATAATGTTTCCCGCGC
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS [H]
Number of amino acids: Translated: 881; Mature: 880
Protein sequence:
>881_residues MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNV GYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGLPRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNF WRMGDTGPCGPCSEIFFDHGPDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTRE TVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFKAMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLD LTQDALRGSSHDVDVTGFDRAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYATEQADAEIQAIVTDGRSVT EAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGLRIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAI RAHHSATHLLHEALRRRLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEAVAQG AMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVSAGIRRIEAVTGKSAEQAAVATEQR LGQMAAMLRVSAAEAPERLAVILDERKVMERQISDLQRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQ QVGSGVVALVSTAEGKGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIARSEAALAAVRGAVAAA A
Sequences:
>Translated_881_residues MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNV GYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGLPRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNF WRMGDTGPCGPCSEIFFDHGPDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTRE TVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFKAMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLD LTQDALRGSSHDVDVTGFDRAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYATEQADAEIQAIVTDGRSVT EAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGLRIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAI RAHHSATHLLHEALRRRLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEAVAQG AMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVSAGIRRIEAVTGKSAEQAAVATEQR LGQMAAMLRVSAAEAPERLAVILDERKVMERQISDLQRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQ QVGSGVVALVSTAEGKGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIARSEAALAAVRGAVAAA A >Mature_880_residues STTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVG YTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGLPRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFW RMGDTGPCGPCSEIFFDHGPDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQGK RDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTRET VFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFKAMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDL TQDALRGSSHDVDVTGFDRAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYATEQADAEIQAIVTDGRSVTE APAGTEIALLLNQTPFYGESGGQVGDTGLITAPGLRIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIR AHHSATHLLHEALRRRLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEAVAQGA MALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVSAGIRRIEAVTGKSAEQAAVATEQRL GQMAAMLRVSAAEAPERLAVILDERKVMERQISDLQRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQ VGSGVVALVSTAEGKGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPDIARSEAALAAVRGAVAAAA
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI109148542, Length=968, Percent_Identity=36.2603305785124, Blast_Score=519, Evalue=1e-147, Organism=Homo sapiens, GI38569417, Length=929, Percent_Identity=33.9074273412271, Blast_Score=417, Evalue=1e-116, Organism=Escherichia coli, GI1789048, Length=889, Percent_Identity=51.6310461192351, Blast_Score=888, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=977, Percent_Identity=35.5168884339816, Blast_Score=507, Evalue=1e-143, Organism=Caenorhabditis elegans, GI17536681, Length=734, Percent_Identity=32.5613079019074, Blast_Score=365, Evalue=1e-101, Organism=Saccharomyces cerevisiae, GI6324911, Length=782, Percent_Identity=39.1304347826087, Blast_Score=526, Evalue=1e-150, Organism=Drosophila melanogaster, GI24582809, Length=965, Percent_Identity=34.300518134715, Blast_Score=490, Evalue=1e-138, Organism=Drosophila melanogaster, GI45552267, Length=965, Percent_Identity=34.300518134715, Blast_Score=490, Evalue=1e-138, Organism=Drosophila melanogaster, GI24658214, Length=839, Percent_Identity=31.7044100119189, Blast_Score=357, Evalue=2e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD [H]
EC number: =6.1.1.7 [H]
Molecular weight: Translated: 95322; Mature: 95191
Theoretical pI: Translated: 5.35; Mature: 5.35
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR CCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCEEEHHHHCCCCCCCCHH ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG CHHHEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHCCC PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDALRGSSHDVDVTGFDR HHHHCCCEEECCCHHHCCCCCCCCCHHEEEEEHHCCCCCCCCHHHHCCCCCCCEECCHHH AMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYATEQADAEIQAIVTDGRSVT HHHHHHHHHHHHCCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCC EAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGLRIAVTDTQKRLGDLMVHYGTVVEG CCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHHHHHHHHCHHEEH TVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALRRRLGAHVTQKGSLNAPDRLRFDISQ HHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEECCC PRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEAVAQGAMALFGEKYGDEVRVVFMGA CCCCCHHHHHCCHHHHCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEC PEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVSAGIRRIEAVTGKSAEQAAVATEQR CCCCCCEEEEEECCCCCCCCCCCEEEEEEECHHCHHHHHHHHHHHCCCCHHHHHHHHHHH LGQMAAMLRVSAAEAPERLAVILDERKVMERQISDLQRKLASGGSDGAQAETINGIGFVA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH RDVGDLPARELKPLADSLRQQVGSGVVALVSTAEGKGSVVVAVTSDLTDRLDAVELVRLA HHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHH SAAMGGKGGGGRRDMAQAGGPDIARSEAALAAVRGAVAAAA HHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure STTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR CCCHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCEEEHHHHCCCCCCCCHH ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG CHHHEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHCCC PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY CCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHH VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHH AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDALRGSSHDVDVTGFDR HHHHCCCEEECCCHHHCCCCCCCCCHHEEEEEHHCCCCCCCCHHHHCCCCCCCEECCHHH AMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGYATEQADAEIQAIVTDGRSVT HHHHHHHHHHHHCCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCC EAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPGLRIAVTDTQKRLGDLMVHYGTVVEG CCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEECHHHHHHHHHHHHCHHEEH TVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALRRRLGAHVTQKGSLNAPDRLRFDISQ HHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEECCC PRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEEAVAQGAMALFGEKYGDEVRVVFMGA CCCCCHHHHHCCHHHHCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEC PEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGVSAGIRRIEAVTGKSAEQAAVATEQR CCCCCCEEEEEECCCCCCCCCCCEEEEEEECHHCHHHHHHHHHHHCCCCHHHHHHHHHHH LGQMAAMLRVSAAEAPERLAVILDERKVMERQISDLQRKLASGGSDGAQAETINGIGFVA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH RDVGDLPARELKPLADSLRQQVGSGVVALVSTAEGKGSVVVAVTSDLTDRLDAVELVRLA HHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHH SAAMGGKGGGGRRDMAQAGGPDIARSEAALAAVRGAVAAAA HHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA