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The map label for this gene is sodB [H]

Identifier: 162147952

GI number: 162147952

Start: 2219139

End: 2219843

Strand: Direct

Name: sodB [H]

Synonym: GDI_2168

Alternate gene names: 162147952

Gene position: 2219139-2219843 (Clockwise)

Preceding gene: 162147950

Following gene: 162147960

Centisome position: 56.26

GC content: 63.26

Gene sequence:

>705_bases
ATGTGGTCATCTCTCCGTCACTTGACGCACCCGGCCGGCGCTCATAGCTCTGATAGATGGCGGTTCCCCGCCCATGCAAT
TCCAAGGAGAACGTCCATGGCTTTCGAATTGCCCACCCTTCCGTTCCAGACCAACGCGCTGGCGGCGCGCGGCATGTGCC
AGGAAACGCTGGAGCTGCACCACGGCAAGCACCATCAGGCCTATGTCACCGCGCTGAACGGCTTCGTCGAAGCGAAGCCC
GAACTTCAGGGCAAGTCGCTGGAAGAGATCATTCTGGCCGTCAAGGGCGACGCCGCCTCGGCCCCGGTGTTCAACAATGC
CGGCCAGCACTGGAACCATATCCTGTTCTGGCAGAACCTGTCCCCGACCGGCGGCGCGATCCCCGACGCCCTGGCCAAGA
AGCTGGCCGAGGATTTCGGCAGCGTCGACGATTTCAAGACCGCGTTCAAGACCGCCGCGACGACGCAGTTCGGGTCGGGC
TGGGCGTGGCTGGTCCTGGCGGCCGACGGCAAGCTGAAGGTGACCAAGACCGCCAACGGCTCCAACCCGCTGGCCGAAGG
CCAGGGCAAGGTGCTTCTGGGCCTGGATGTGTGGGAACATTCCTACTATCTGGATTTCCGCAACCGTCGTCCGGACTACA
CCACCAACTACCTGGACAAGCTGGCGAACTACGAGTTCGCCGAGGCGCAGCTCAAGGCCGCCTGA

Upstream 100 bases:

>100_bases
GCGGAGAGGCCCGTTTCGGCCGCGCGCTTTTCCGTAGTATTCGTCATGTCACGGACATGCCGCGCGCCGGCCGCGGGCAC
AAGCCCGGCGGCGACGGGGG

Downstream 100 bases:

>100_bases
TCGGCCCCGTCCGGCAGGCGGCATGAAAAACCCGGCCGATCCGGCCGGGTTTTTCTATGCCTGATGTTCCCTGCACGGCA
GGTTCAGGGCCGGCGGCGCC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MWSSLRHLTHPAGAHSSDRWRFPAHAIPRRTSMAFELPTLPFQTNALAARGMCQETLELHHGKHHQAYVTALNGFVEAKP
ELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNLSPTGGAIPDALAKKLAEDFGSVDDFKTAFKTAATTQFGSG
WAWLVLAADGKLKVTKTANGSNPLAEGQGKVLLGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQLKAA

Sequences:

>Translated_234_residues
MWSSLRHLTHPAGAHSSDRWRFPAHAIPRRTSMAFELPTLPFQTNALAARGMCQETLELHHGKHHQAYVTALNGFVEAKP
ELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNLSPTGGAIPDALAKKLAEDFGSVDDFKTAFKTAATTQFGSG
WAWLVLAADGKLKVTKTANGSNPLAEGQGKVLLGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQLKAA
>Mature_234_residues
MWSSLRHLTHPAGAHSSDRWRFPAHAIPRRTSMAFELPTLPFQTNALAARGMCQETLELHHGKHHQAYVTALNGFVEAKP
ELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNLSPTGGAIPDALAKKLAEDFGSVDDFKTAFKTAATTQFGSG
WAWLVLAADGKLKVTKTANGSNPLAEGQGKVLLGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQLKAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=181, Percent_Identity=40.8839779005525, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI67782305, Length=181, Percent_Identity=40.8839779005525, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI67782309, Length=179, Percent_Identity=32.9608938547486, Blast_Score=82, Evalue=3e-16,
Organism=Escherichia coli, GI1787946, Length=202, Percent_Identity=47.029702970297, Blast_Score=177, Evalue=4e-46,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=43.2692307692308, Blast_Score=159, Evalue=2e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=201, Percent_Identity=37.8109452736318, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=37.5, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=196, Percent_Identity=37.2448979591837, Blast_Score=96, Evalue=7e-21,
Organism=Drosophila melanogaster, GI17136812, Length=219, Percent_Identity=37.4429223744292, Blast_Score=127, Evalue=9e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 25841; Mature: 25841

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSSLRHLTHPAGAHSSDRWRFPAHAIPRRTSMAFELPTLPFQTNALAARGMCQETLELH
CCCCHHHHCCCCCCCCCCCEECCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
HGKHHQAYVTALNGFVEAKPELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNL
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
SPTGGAIPDALAKKLAEDFGSVDDFKTAFKTAATTQFGSGWAWLVLAADGKLKVTKTANG
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCC
SNPLAEGQGKVLLGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQLKAA
CCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHCCCHHHHEECCC
>Mature Secondary Structure
MWSSLRHLTHPAGAHSSDRWRFPAHAIPRRTSMAFELPTLPFQTNALAARGMCQETLELH
CCCCHHHHCCCCCCCCCCCEECCHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHH
HGKHHQAYVTALNGFVEAKPELQGKSLEEIILAVKGDAASAPVFNNAGQHWNHILFWQNL
CCCCCHHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCCCCCCCCCCCCCCCCEEEEECCC
SPTGGAIPDALAKKLAEDFGSVDDFKTAFKTAATTQFGSGWAWLVLAADGKLKVTKTANG
CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCC
SNPLAEGQGKVLLGLDVWEHSYYLDFRNRRPDYTTNYLDKLANYEFAEAQLKAA
CCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9765573 [H]