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The map label for this gene is rnpA

Identifier: 162147921

GI number: 162147921

Start: 2191072

End: 2191422

Strand: Reverse

Name: rnpA

Synonym: GDI_2137

Alternate gene names: 162147921

Gene position: 2191422-2191072 (Counterclockwise)

Preceding gene: 162147923

Following gene: 162147919

Centisome position: 55.56

GC content: 70.09

Gene sequence:

>351_bases
GTGGCCGACCGCGCCCATCGTCTCAAGAAACGCGCAGAGTTCCTGAAGGTCGCATCCAGGGGGCGGAAAGTGCCGTCGCC
TGGCCTTGTGCTGCAGGCCCTGGGGCGGGACGACTCCGATCCGGCCAGGATCGGCTTTACCGTGACAAAGAAGGTCGGAA
ACGCCGTCGTCCGCAACCGGACGCGCCGCCGCCTGCGTGAAGCGGTGCGCGTCGTGGAACGCGAGGAGCCGCTGAACGGG
GTCGATCTGGTCCTGATCGGGCGCGACGGAACGCGCGGACGCACCTTCGCCGCCCTGGTGGGCGACCTGCGCCGTACCCT
GCGCAAGGCGGGCGTGCGGGGAGCGGAGTGA

Upstream 100 bases:

>100_bases
CGCCGCGCCAAGGGCCGCAAGCGCCTTTCCGCCTGATCATCAGGCCTGTCGTGTCCCCGGGCCAGTCCCGGGGCGCCGAG
TTTCCAGGGGGCTGCTGATA

Downstream 100 bases:

>100_bases
GTGCAGTTCTGGCTTGGCTCTTGATCGGCGCGATTCGCGTCTATCAATGGGTCTTGAGCCCCGTCCTGGGACCGAATTGC
CGATTCGTGCCCTCCTGCAG

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNRTRRRLREAVRVVEREEPLNG
VDLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE

Sequences:

>Translated_116_residues
MADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNRTRRRLREAVRVVEREEPLNG
VDLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE
>Mature_115_residues
ADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNRTRRRLREAVRVVEREEPLNGV
DLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_GLUDA (A9HKS8)

Other databases:

- EMBL:   CP001189
- EMBL:   AM889285
- RefSeq:   YP_001602382.1
- RefSeq:   YP_002274767.1
- ProteinModelPortal:   A9HKS8
- SMR:   A9HKS8
- GeneID:   5792496
- GeneID:   6973750
- GenomeReviews:   AM889285_GR
- GenomeReviews:   CP001189_GR
- KEGG:   gdj:Gdia_0356
- HOGENOM:   HBG728160
- OMA:   IRVGFTC
- ProtClustDB:   CLSK936517
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 12878; Mature: 12747

Theoretical pI: Translated: 12.28; Mature: 12.28

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TRRRLREAVRVVEREEPLNGVDLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ADRAHRLKKRAEFLKVASRGRKVPSPGLVLQALGRDDSDPARIGFTVTKKVGNAVVRNR
CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
TRRRLREAVRVVEREEPLNGVDLVLIGRDGTRGRTFAALVGDLRRTLRKAGVRGAE
HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA