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The map label for this gene is exoX [H]

Identifier: 162147891

GI number: 162147891

Start: 2156861

End: 2157670

Strand: Direct

Name: exoX [H]

Synonym: GDI_2107

Alternate gene names: 162147891

Gene position: 2156861-2157670 (Clockwise)

Preceding gene: 162147882

Following gene: 162147898

Centisome position: 54.68

GC content: 72.59

Gene sequence:

>810_bases
ATGGACGGTTCCATCCCCCCTTCCGGCAGCCCGCCCACGCCGTTCGTCCGCGTGATCGACCTGGAAACCAGCGGGCGGAA
TGCCGCCGATGGCGGGATCGTCGAAATCGGCTGGCAGGATGTCGCCCGGGACGCCGACGGCACCTGGGCCCTGGCCGGCC
CACCCGGGGCGCGCCTGACCCACCCGGGCGGCCCCATCACGCCGCAGACCATGGCGATCCATCACATTACCGACGCGCAC
GTGCGCGACGCCCCGCCCTTTGCCGAGATCGCGCCCGACATCCTGCACCCGGCGGACCGGCCGGCGGCGATGGCGGCCCA
TCGCGCCAGTTTCGAACAGGGCTGGATTCGCGGCAGCCTGCCGCCTGCCCTGACGACCGGACTGCACTGGATCTGCACCT
ATAAATGCGCGCTGCGGCTGTGGCCCGACGAACCGGGACATTCCAACCAGGGCCTGCGCCATTCCCGCCGGCCTGCCGGG
CTGGAGCGCGCACTGGGCGACCCGCCGCACCGCGCCGGGCCCGATGCCTATGTCACGGCGCACCATCTGCGCGACATGCT
GGCGCTGGCCACGGTGGAGCAGTTGCTGCGCTGGTCGCGCGAACCCGCCCTGCTGACCCGTGTGCCGCACGGCCCGCTAC
GCGGCCGCCAGATCCGCAACCTGGCGACCGGCGACCTGGACCGGCTGCTGGCCGAGGACCGCCGACGCGGCCCCGACCTG
GCCTTCACCCTGCGCACCGAACGCGCGCGCCGCGCCGGGCTAAACGAGACGACGCTAGCGCCGCCGGTTCAGCAGGCCTT
TCGCTTTTAA

Upstream 100 bases:

>100_bases
TGGGGATCGCGCGACCCGGACGCAAGGCCCATCGCACGCACACCCGCCCCCCGCCGCAATTCGGCCTTGGCATCTCGCCC
GCGCGGCCTACACTCGCGGG

Downstream 100 bases:

>100_bases
CGACGGCTTCGTAAGCCCCGCCGAGGGGCGTCTCAGTTCTGTCCAATTTTCGATCAGGATCTTGAGCGCCCATAGGATGC
AGCCAAATCCGATGGCGAAC

Product: exodeoxyribonuclease

Products: NA

Alternate protein names: Exodeoxyribonuclease X; Exo X; Exonuclease X [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIHHITDAH
VRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAG
LERALGDPPHRAGPDAYVTAHHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDL
AFTLRTERARRAGLNETTLAPPVQQAFRF

Sequences:

>Translated_269_residues
MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIHHITDAH
VRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAG
LERALGDPPHRAGPDAYVTAHHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDL
AFTLRTERARRAGLNETTLAPPVQQAFRF
>Mature_269_residues
MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLTHPGGPITPQTMAIHHITDAH
VRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSLPPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAG
LERALGDPPHRAGPDAYVTAHHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDL
AFTLRTERARRAGLNETTLAPPVQQAFRF

Specific function: Capable of degrading both single-strand and double- strand DNA with 3' to 5' polarity. Has higher affinity for ssDNA ends than for dsDNA. May facilitate recombinational repair by pre- synaptic and/or post-synaptic DNA degradation [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788149, Length=236, Percent_Identity=35.1694915254237, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 29342; Mature: 29342

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLT
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCCCEEECCCCCCCEE
HPGGPITPQTMAIHHITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSL
CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
PPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTA
CHHHHHHHHHHHEEEHHEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH
HHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDL
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AFTLRTERARRAGLNETTLAPPVQQAFRF
EEEEEHHHHHHCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MDGSIPPSGSPPTPFVRVIDLETSGRNAADGGIVEIGWQDVARDADGTWALAGPPGARLT
CCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECHHHHHCCCCCCEEECCCCCCCEE
HPGGPITPQTMAIHHITDAHVRDAPPFAEIAPDILHPADRPAAMAAHRASFEQGWIRGSL
CCCCCCCCCCEEEEECCCCCCCCCCCHHHHCHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
PPALTTGLHWICTYKCALRLWPDEPGHSNQGLRHSRRPAGLERALGDPPHRAGPDAYVTA
CHHHHHHHHHHHEEEHHEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH
HHLRDMLALATVEQLLRWSREPALLTRVPHGPLRGRQIRNLATGDLDRLLAEDRRRGPDL
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
AFTLRTERARRAGLNETTLAPPVQQAFRF
EEEEEHHHHHHCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]