Click here to switch to the map view.

The map label for this gene is cspG [C]

Identifier: 162147832

GI number: 162147832

Start: 2095834

End: 2096037

Strand: Reverse

Name: cspG [C]

Synonym: GDI_2048

Alternate gene names: 162147832

Gene position: 2096037-2095834 (Counterclockwise)

Preceding gene: 162147833

Following gene: 162147830

Centisome position: 53.14

GC content: 62.25

Gene sequence:

>204_bases
ATGGCGACGGGAACTGTGAAGTGGTTCAACGCGACCAAGGGCTTCGGATTCATCATGCCGGAAGATGGCGGCAAGGATGT
GTTCGTCCACATTACGGCTGTCCAGGCGGCCGGGCTGCGCGGCCTGAACGAAAACCAGCGCGTCAGCTATGACGTGGTGA
CCGAGCGCGGCAAGGCGGCGGCTTCGAACCTCAAGCCGCTCTGA

Upstream 100 bases:

>100_bases
GGCAGCGATCGTCGGCGGAACCGTCCGCCGGGGAGGCGTATCCGATGGACAGGTTATGTACAGATCGGCGGCAAGCCGGA
CAGCCAAGGATAGATCGACT

Downstream 100 bases:

>100_bases
TCGCGACCCGCATCAGGACGTGAAGGACGGGGAGGGCGGAAAACCGTCTTCCCCGTTTTCATGTCCGCGCAGGAAGGATT
CCATGTCCCGCGCCACCTCG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTERGKAAASNLKPL

Sequences:

>Translated_67_residues
MATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTERGKAAASNLKPL
>Mature_66_residues
ATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTERGKAAASNLKPL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=62.2950819672131, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=53.8461538461538, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=51.5625, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=53.2258064516129, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1787834, Length=50, Percent_Identity=58, Blast_Score=69, Evalue=5e-14,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=48.4375, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1787107, Length=52, Percent_Identity=55.7692307692308, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7182; Mature: 7051

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTERGKAA
CCCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCC
ASNLKPL
CCCCCCC
>Mature Secondary Structure 
ATGTVKWFNATKGFGFIMPEDGGKDVFVHITAVQAAGLRGLNENQRVSYDVVTERGKAA
CCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCC
ASNLKPL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]