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The map label for this gene is phyR [H]

Identifier: 162147524

GI number: 162147524

Start: 1762485

End: 1763168

Strand: Reverse

Name: phyR [H]

Synonym: GDI_1740

Alternate gene names: 162147524

Gene position: 1763168-1762485 (Counterclockwise)

Preceding gene: 162147525

Following gene: 162147523

Centisome position: 44.7

GC content: 69.3

Gene sequence:

>684_bases
CTGACCGGCAGCCAATCGCGCGGTGACCTCCTGGTTGCCGAAAGCCTGCGGGGCCTCGCCCTCGCGGAGGTCGGATCGCT
GCCGGCCCGGCAGAGCCTGTATCAATGGATTTCCCGCCATTACCGACCCGCGGACACCTCCCATCCCGGAACGGACGCCC
CGACCGGGATGGGGACGATCGAACGCAAGCTGCTGCTGCTGACGTCGCTGGAGGAACTGCCGATCGCCGAGGCGGCGCGG
ATCGTCGACCTGGACCTGGCCCGGGCCACCGAGATCCTGGCGCATGCCCGTGCCGGACTGCGCACGGTGGCCGAGACCTC
GATCCTGATCATCGAGGACGAGCCGATCATCGCCATGGATATCGAGGACCTCGTGCGGCGCTGCGGCCATCAGGTCGCCG
GCGTGGCCGCGACGGAAGCCGACGCCATCGCCCTGGCCCGGGAAACCCGCCCGGGCCTGATCCTGGCCGACATCAACCTG
GGCGCGGGCGGTGACGGCATGAACGCCGTCACCAGCATCCTGCGCCACCACGACGCGCCGGTCATCTTCGTCACCGCCTA
TCCCGAACGACTGCTGACCGGCGAGGCCGTGGAACCCGCCTTCGTCATCACCAAGCCGTTCGAGCCGACGACCCTGGCCA
TCGCGACCTACCAGGCGGTCACCGGCGGCCCGCAGATAAGATAG

Upstream 100 bases:

>100_bases
ATTTGTCAGCAGTGGGAAAAAGAACCATCACGGTTCATACATTAATCCGCACCACCAAATCCCGGGACAAAACACCTATG
CCAGGCGATATGCGCGCGCC

Downstream 100 bases:

>100_bases
GCCGGGCACCGGGCAAGGCATGGCCCTTGCGCCGGGCATGGCGCTTGGGCCAGAACCCTTGGCATGGCGCCTCCCCTTCT
TCTCCTCCAGGACATCACGC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MTGSQSRGDLLVAESLRGLALAEVGSLPARQSLYQWISRHYRPADTSHPGTDAPTGMGTIERKLLLLTSLEELPIAEAAR
IVDLDLARATEILAHARAGLRTVAETSILIIEDEPIIAMDIEDLVRRCGHQVAGVAATEADAIALARETRPGLILADINL
GAGGDGMNAVTSILRHHDAPVIFVTAYPERLLTGEAVEPAFVITKPFEPTTLAIATYQAVTGGPQIR

Sequences:

>Translated_227_residues
MTGSQSRGDLLVAESLRGLALAEVGSLPARQSLYQWISRHYRPADTSHPGTDAPTGMGTIERKLLLLTSLEELPIAEAAR
IVDLDLARATEILAHARAGLRTVAETSILIIEDEPIIAMDIEDLVRRCGHQVAGVAATEADAIALARETRPGLILADINL
GAGGDGMNAVTSILRHHDAPVIFVTAYPERLLTGEAVEPAFVITKPFEPTTLAIATYQAVTGGPQIR
>Mature_226_residues
TGSQSRGDLLVAESLRGLALAEVGSLPARQSLYQWISRHYRPADTSHPGTDAPTGMGTIERKLLLLTSLEELPIAEAARI
VDLDLARATEILAHARAGLRTVAETSILIIEDEPIIAMDIEDLVRRCGHQVAGVAATEADAIALARETRPGLILADINLG
AGGDGMNAVTSILRHHDAPVIFVTAYPERLLTGEAVEPAFVITKPFEPTTLAIATYQAVTGGPQIR

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24155; Mature: 24024

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGSQSRGDLLVAESLRGLALAEVGSLPARQSLYQWISRHYRPADTSHPGTDAPTGMGTI
CCCCCCCCCEEEEHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
ERKLLLLTSLEELPIAEAARIVDLDLARATEILAHARAGLRTVAETSILIIEDEPIIAMD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEC
IEDLVRRCGHQVAGVAATEADAIALARETRPGLILADINLGAGGDGMNAVTSILRHHDAP
HHHHHHHCCHHHHCEECCCHHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC
VIFVTAYPERLLTGEAVEPAFVITKPFEPTTLAIATYQAVTGGPQIR
EEEEEECCHHHHCCCCCCCEEEEECCCCCCEEEEEEEEHHCCCCCCC
>Mature Secondary Structure 
TGSQSRGDLLVAESLRGLALAEVGSLPARQSLYQWISRHYRPADTSHPGTDAPTGMGTI
CCCCCCCCEEEEHHHCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
ERKLLLLTSLEELPIAEAARIVDLDLARATEILAHARAGLRTVAETSILIIEDEPIIAMD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEC
IEDLVRRCGHQVAGVAATEADAIALARETRPGLILADINLGAGGDGMNAVTSILRHHDAP
HHHHHHHCCHHHHCEECCCHHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC
VIFVTAYPERLLTGEAVEPAFVITKPFEPTTLAIATYQAVTGGPQIR
EEEEEECCHHHHCCCCCCCEEEEECCCCCCEEEEEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA