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The map label for this gene is lsrB [H]

Identifier: 162147290

GI number: 162147290

Start: 1502505

End: 1503611

Strand: Reverse

Name: lsrB [H]

Synonym: GDI_1495

Alternate gene names: 162147290

Gene position: 1503611-1502505 (Counterclockwise)

Preceding gene: 162147292

Following gene: 162147289

Centisome position: 38.12

GC content: 64.77

Gene sequence:

>1107_bases
ATGATGATTGACTATGATCATAAATCCTCGTTAGCGTCCGTCATCGGCGCCCTTCCGGCCGGCGGGCGCCGTCTCAACGC
TGTGGGAACCATGCGCAGACATGGGCCACGAGGAGACAACATCGTGAAGAAGCATTCGGCGGTGATCGCGGCGCTGGTGG
CGGCAGGCCTGTCCTGCATGGCCCCGGCACAAGGCCGCGCGGAAACATTCCAGATCGGCTTCGTGCCCAAGGTTATCGGC
ATTCCCTATTTCAGCGCCATGCAGCAGGGCTTCCTGAAGGGGGGCCGGGCGTTCGACGCCAGGATCGTCTACCAGGGACC
GACGACATCCTCGGTCGCGGCGCAGGCGCAGATCGTCCAGAGCCTGATCAACCGCAAGCTGGATGCCGTCGCCGTCGCCG
CCAACAGCCCCACCGCCCTCGAAGCCCAGGCCGTGCATGCGCGCGAACGCGGCGTCATCTTCGCCTCGACCGACAGCCAG
GTGGATGGCGACGCGGTGGACCTGCGGGTCATGCAGGCCACGGACGAGGCCCTGGCCCACACGCTGGTCGACCAGCTTGC
CACGCAGATCCCCGACGGGGGGCAGATCGCCTTCGTCTCCGGCGGGCCGACCGCGACGAACCTGAACATGTGGATTTCCC
TGATGAAATCCTATCTGGCCGCCAAATTTCCCAAGTTCCAGCTGGTCAGCGTCCAGTATGCCGGCGAGGATATCAGCAAG
GCGACCGAGATCACGTCGCAGATCCTGTCGGCCTATCCCGGCCTGAAGGGGATCATCGGCGTCAACACCACCGCGACGCC
GGGCGCGGCCCAGGCGGTGCTGCAGGCCGGTCTGGCCGGAAAGATCGCCATTACCGGCATCGACGACCCGAACACCATCC
GCCCCTACGTGCTGAACGGCACCGTCAAGAGCGCGGTGCTGTGGAACCCGGTCGACCTGGGATACCTGACGGTCTGGGGC
CTGACGCAGCTTCTGCAGCACAAGCCGCTGCAGGTGCAGAACCCCGTGCCCGGCCTGGGCACCATCACGTACGACCCGAA
GACGAAGACGCTGCTGCTGGGCCAGCCGATGGTCTTCACCAAAGAGAACATTTCCCTGGATTTCTGA

Upstream 100 bases:

>100_bases
TCGGGGCGACGTCTGGCACGATATCTTCACCTTTTTAGTGAAGGCACCTTTCTGATCTGATTCGATCACATTATGGCGCA
TTTGCTCCATAATGTGATCG

Downstream 100 bases:

>100_bases
GGTGCGTCATGAACCGTCTCGAACTGAGGGGGATCGTGAAGTCGTTCGGCGGCGTCAGGGCGCTGAAGGGTGTGGACGCG
GTGATCGAAGCCGGCCGGAC

Product: ribose ABC transporter substrate-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MMIDYDHKSSLASVIGALPAGGRRLNAVGTMRRHGPRGDNIVKKHSAVIAALVAAGLSCMAPAQGRAETFQIGFVPKVIG
IPYFSAMQQGFLKGGRAFDARIVYQGPTTSSVAAQAQIVQSLINRKLDAVAVAANSPTALEAQAVHARERGVIFASTDSQ
VDGDAVDLRVMQATDEALAHTLVDQLATQIPDGGQIAFVSGGPTATNLNMWISLMKSYLAAKFPKFQLVSVQYAGEDISK
ATEITSQILSAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNGTVKSAVLWNPVDLGYLTVWG
LTQLLQHKPLQVQNPVPGLGTITYDPKTKTLLLGQPMVFTKENISLDF

Sequences:

>Translated_368_residues
MMIDYDHKSSLASVIGALPAGGRRLNAVGTMRRHGPRGDNIVKKHSAVIAALVAAGLSCMAPAQGRAETFQIGFVPKVIG
IPYFSAMQQGFLKGGRAFDARIVYQGPTTSSVAAQAQIVQSLINRKLDAVAVAANSPTALEAQAVHARERGVIFASTDSQ
VDGDAVDLRVMQATDEALAHTLVDQLATQIPDGGQIAFVSGGPTATNLNMWISLMKSYLAAKFPKFQLVSVQYAGEDISK
ATEITSQILSAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNGTVKSAVLWNPVDLGYLTVWG
LTQLLQHKPLQVQNPVPGLGTITYDPKTKTLLLGQPMVFTKENISLDF
>Mature_368_residues
MMIDYDHKSSLASVIGALPAGGRRLNAVGTMRRHGPRGDNIVKKHSAVIAALVAAGLSCMAPAQGRAETFQIGFVPKVIG
IPYFSAMQQGFLKGGRAFDARIVYQGPTTSSVAAQAQIVQSLINRKLDAVAVAANSPTALEAQAVHARERGVIFASTDSQ
VDGDAVDLRVMQATDEALAHTLVDQLATQIPDGGQIAFVSGGPTATNLNMWISLMKSYLAAKFPKFQLVSVQYAGEDISK
ATEITSQILSAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNGTVKSAVLWNPVDLGYLTVWG
LTQLLQHKPLQVQNPVPGLGTITYDPKTKTLLLGQPMVFTKENISLDF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=335, Percent_Identity=30.7462686567164, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790526, Length=256, Percent_Identity=24.21875, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38830; Mature: 38830

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIDYDHKSSLASVIGALPAGGRRLNAVGTMRRHGPRGDNIVKKHSAVIAALVAAGLSCM
CEECCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHC
APAQGRAETFQIGFVPKVIGIPYFSAMQQGFLKGGRAFDARIVYQGPTTSSVAAQAQIVQ
CCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHH
SLINRKLDAVAVAANSPTALEAQAVHARERGVIFASTDSQVDGDAVDLRVMQATDEALAH
HHHCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEHHHHHHHHH
TLVDQLATQIPDGGQIAFVSGGPTATNLNMWISLMKSYLAAKFPKFQLVSVQYAGEDISK
HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
ATEITSQILSAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNG
HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECC
TVKSAVLWNPVDLGYLTVWGLTQLLQHKPLQVQNPVPGLGTITYDPKTKTLLLGQPMVFT
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCEEEECCCEEEE
KENISLDF
ECCCEECC
>Mature Secondary Structure
MMIDYDHKSSLASVIGALPAGGRRLNAVGTMRRHGPRGDNIVKKHSAVIAALVAAGLSCM
CEECCCCHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHC
APAQGRAETFQIGFVPKVIGIPYFSAMQQGFLKGGRAFDARIVYQGPTTSSVAAQAQIVQ
CCCCCCCEEEEEECCHHHHCCCHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHH
SLINRKLDAVAVAANSPTALEAQAVHARERGVIFASTDSQVDGDAVDLRVMQATDEALAH
HHHCCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEHHHHHHHHH
TLVDQLATQIPDGGQIAFVSGGPTATNLNMWISLMKSYLAAKFPKFQLVSVQYAGEDISK
HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHH
ATEITSQILSAYPGLKGIIGVNTTATPGAAQAVLQAGLAGKIAITGIDDPNTIRPYVLNG
HHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECC
TVKSAVLWNPVDLGYLTVWGLTQLLQHKPLQVQNPVPGLGTITYDPKTKTLLLGQPMVFT
CCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEECCCCCEEEECCCEEEE
KENISLDF
ECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA