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The map label for this gene is araC [C]

Identifier: 162147171

GI number: 162147171

Start: 1380391

End: 1381206

Strand: Reverse

Name: araC [C]

Synonym: GDI_1376

Alternate gene names: 162147171

Gene position: 1381206-1380391 (Counterclockwise)

Preceding gene: 162147172

Following gene: 162147170

Centisome position: 35.02

GC content: 63.73

Gene sequence:

>816_bases
ATGGGCAGCACATCACGCGGTGCAGGCAACCTGCACGACGCACGACGCCGGCAGGTGGTCCTGTCGGATTTCGTCGTCTC
AGACAGTCTTTATGCCCCCTCGCTGCGGATCGCCCGGCACGATCACGAACTGGCCAGCCTGTGTCTTGTCCTGAGTGGCG
GCTATCAGGAAGTTTTCGGGCAGCGCGCCCGCACGGCGACCCCCGGCATGCTGATCGTTCACCCGCCGGGCGAGCATCAC
GCCGACCGGCACGCACCATCTCCCACACGGATCCTGACTATCGAAATCGCCGCACACGCGCTCGATCATTACCGGCAGGG
AACAGGATTGTTCAGCGACGCCATGGATCGCCATGATCCGGGCATTGTCGGACTGGGCATGCGGCTTGCCCGTGCCATCC
GCGACAAGTCCACAAAGGACGCATGCGAAACGGAAAGCATCGTATCCGACATACTGGATCACGCCTGTCTATCGGTTCAG
GCCGACGCGCGCGGCGCGAAATGGCTTCTGGCCGTCAGGGATTATCTTCACGCCCATCCGGGCCGCCAGACCTCGATGCG
GGAACTCGCCGCCCTGGCGAACGTGCATCCCATTCATCTGGCGCGCGCCTTTCGCACCATATTCGGCTGTAGCATCGGCC
GCTACATGCGCCGGCTGCGCGTCGGAGTGGCCTTGTCCCTTCTGCACGACGGCGAGTCCGGCCTGGCGGATGTCGCCGAC
CTGGCCGGTTTCAGTGACCAGAGCCATATGACCCGTCTGGTCAAGGCGTCGACGGGACAATCGCCCGGTAGATTGCGCGG
GGACCGAATGTTCTGA

Upstream 100 bases:

>100_bases
TGAATACGCATCCACCGTACCCCCGGCGGGATCGTCCCGCCGGCACGCGCGACCGCACCCGGTTCGATACGGCACGCCGA
GCCTCATTGAAGGACATCCG

Downstream 100 bases:

>100_bases
CCGTCGCGCACGCGGGCCGGTGGAATGTTTGTCCTGTTCAAGACGCCTGCCCGCGGATCGCGTTATCTGCGCCCCATGAT
CCGATATTCCCTTCCTGCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcription Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MGSTSRGAGNLHDARRRQVVLSDFVVSDSLYAPSLRIARHDHELASLCLVLSGGYQEVFGQRARTATPGMLIVHPPGEHH
ADRHAPSPTRILTIEIAAHALDHYRQGTGLFSDAMDRHDPGIVGLGMRLARAIRDKSTKDACETESIVSDILDHACLSVQ
ADARGAKWLLAVRDYLHAHPGRQTSMRELAALANVHPIHLARAFRTIFGCSIGRYMRRLRVGVALSLLHDGESGLADVAD
LAGFSDQSHMTRLVKASTGQSPGRLRGDRMF

Sequences:

>Translated_271_residues
MGSTSRGAGNLHDARRRQVVLSDFVVSDSLYAPSLRIARHDHELASLCLVLSGGYQEVFGQRARTATPGMLIVHPPGEHH
ADRHAPSPTRILTIEIAAHALDHYRQGTGLFSDAMDRHDPGIVGLGMRLARAIRDKSTKDACETESIVSDILDHACLSVQ
ADARGAKWLLAVRDYLHAHPGRQTSMRELAALANVHPIHLARAFRTIFGCSIGRYMRRLRVGVALSLLHDGESGLADVAD
LAGFSDQSHMTRLVKASTGQSPGRLRGDRMF
>Mature_270_residues
GSTSRGAGNLHDARRRQVVLSDFVVSDSLYAPSLRIARHDHELASLCLVLSGGYQEVFGQRARTATPGMLIVHPPGEHHA
DRHAPSPTRILTIEIAAHALDHYRQGTGLFSDAMDRHDPGIVGLGMRLARAIRDKSTKDACETESIVSDILDHACLSVQA
DARGAKWLLAVRDYLHAHPGRQTSMRELAALANVHPIHLARAFRTIFGCSIGRYMRRLRVGVALSLLHDGESGLADVADL
AGFSDQSHMTRLVKASTGQSPGRLRGDRMF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29557; Mature: 29426

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSTSRGAGNLHDARRRQVVLSDFVVSDSLYAPSLRIARHDHELASLCLVLSGGYQEVFG
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHC
QRARTATPGMLIVHPPGEHHADRHAPSPTRILTIEIAAHALDHYRQGTGLFSDAMDRHDP
CCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCC
GIVGLGMRLARAIRDKSTKDACETESIVSDILDHACLSVQADARGAKWLLAVRDYLHAHP
CEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
GRQTSMRELAALANVHPIHLARAFRTIFGCSIGRYMRRLRVGVALSLLHDGESGLADVAD
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LAGFSDQSHMTRLVKASTGQSPGRLRGDRMF
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSTSRGAGNLHDARRRQVVLSDFVVSDSLYAPSLRIARHDHELASLCLVLSGGYQEVFG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHC
QRARTATPGMLIVHPPGEHHADRHAPSPTRILTIEIAAHALDHYRQGTGLFSDAMDRHDP
CCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHCCC
GIVGLGMRLARAIRDKSTKDACETESIVSDILDHACLSVQADARGAKWLLAVRDYLHAHP
CEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
GRQTSMRELAALANVHPIHLARAFRTIFGCSIGRYMRRLRVGVALSLLHDGESGLADVAD
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LAGFSDQSHMTRLVKASTGQSPGRLRGDRMF
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA