Click here to switch to the map view.

The map label for this gene is ydjZ [C]

Identifier: 162147137

GI number: 162147137

Start: 1341558

End: 1342256

Strand: Direct

Name: ydjZ [C]

Synonym: GDI_1342

Alternate gene names: 162147137

Gene position: 1341558-1342256 (Clockwise)

Preceding gene: 162147135

Following gene: 162147138

Centisome position: 34.01

GC content: 76.25

Gene sequence:

>699_bases
ATGACCGACGGCAATCACACCATGGACGCCCGCCCGGCGGCCCTGGCGCGCCCCGCCCTGATGGTGGCCGCGTGCGTCGC
CGCCGGGCTGGTGCTGCGTTTCGCCCCCGGGCTGCACGGGGTGATGGCCGATACCGCGCTGCTGCGCGGCGGGGCGTGGG
GCCGGGTGGTGTTCCTGCTGGCGGGGTCGGTGATCTGCGCCGTGGGGCTGCCGCGCCAGCTTGTCTGCTTTGCCGCCGGG
GTGGCGTACGGCCCGCTGGACGGCATCGCGCTGGCCACGCTGGCCACGCTGGCCGGGGCGGTCACCGGCTTTGCCTGGGC
GCGCGGGGTCGGGCGGGCCGCGCTGCGGCGGCGGCTGTCGGGGCGGCTGGCCCGGCTGGACGGGTTCGTCTCGGCCCATC
CGTTCACCGCGATCCTGACGCTGCGCCTGCTGCCGGTCGGCTCGGCGCTGATGCTGAACCTGCTGGCGGGGGTTTCCGGG
GCGGGGCTGCGCCCCTTCCTTCTGGCCACCCTGGCCGGCAGCCTGCCGCAGACGGTCGTCTTCGTGCTGCTGGGCAGCGG
GGCGCGGATCGGCCATGGCTGGCAGGTGGCGCTGGCGGCGGTGCTGTTCGCGGGGTCGGCGGCGCTGGGCCTGTGGCTGA
TGCGCCGCCTGGCGAATGGGGACACCGTGCCCCTCGCCACCGCCACCGACAGAACGTGA

Upstream 100 bases:

>100_bases
CGGATGCTAGAGCGGGCCATCCCCCACCAATCGATAAACGAGCCGGTTTCCAAAAGGGCTTCGCCCTTTGGCGGACACCA
GGCAGATCGACAAGGACGGC

Downstream 100 bases:

>100_bases
AAGTGCCATCTTGCCGCCGGCTTTGCCCGGTCCGATGTCTTCGCGGGACCCGGGCATGCTGTTGCGGGGATGCACCGCGT
ACGACGAATTGCAGCCTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTDGNHTMDARPAALARPALMVAACVAAGLVLRFAPGLHGVMADTALLRGGAWGRVVFLLAGSVICAVGLPRQLVCFAAG
VAYGPLDGIALATLATLAGAVTGFAWARGVGRAALRRRLSGRLARLDGFVSAHPFTAILTLRLLPVGSALMLNLLAGVSG
AGLRPFLLATLAGSLPQTVVFVLLGSGARIGHGWQVALAAVLFAGSAALGLWLMRRLANGDTVPLATATDRT

Sequences:

>Translated_232_residues
MTDGNHTMDARPAALARPALMVAACVAAGLVLRFAPGLHGVMADTALLRGGAWGRVVFLLAGSVICAVGLPRQLVCFAAG
VAYGPLDGIALATLATLAGAVTGFAWARGVGRAALRRRLSGRLARLDGFVSAHPFTAILTLRLLPVGSALMLNLLAGVSG
AGLRPFLLATLAGSLPQTVVFVLLGSGARIGHGWQVALAAVLFAGSAALGLWLMRRLANGDTVPLATATDRT
>Mature_231_residues
TDGNHTMDARPAALARPALMVAACVAAGLVLRFAPGLHGVMADTALLRGGAWGRVVFLLAGSVICAVGLPRQLVCFAAGV
AYGPLDGIALATLATLAGAVTGFAWARGVGRAALRRRLSGRLARLDGFVSAHPFTAILTLRLLPVGSALMLNLLAGVSGA
GLRPFLLATLAGSLPQTVVFVLLGSGARIGHGWQVALAAVLFAGSAALGLWLMRRLANGDTVPLATATDRT

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23563; Mature: 23432

Theoretical pI: Translated: 12.27; Mature: 12.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDGNHTMDARPAALARPALMVAACVAAGLVLRFAPGLHGVMADTALLRGGAWGRVVFLL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
AGSVICAVGLPRQLVCFAAGVAYGPLDGIALATLATLAGAVTGFAWARGVGRAALRRRLS
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLARLDGFVSAHPFTAILTLRLLPVGSALMLNLLAGVSGAGLRPFLLATLAGSLPQTVV
HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
FVLLGSGARIGHGWQVALAAVLFAGSAALGLWLMRRLANGDTVPLATATDRT
HHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure 
TDGNHTMDARPAALARPALMVAACVAAGLVLRFAPGLHGVMADTALLRGGAWGRVVFLL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH
AGSVICAVGLPRQLVCFAAGVAYGPLDGIALATLATLAGAVTGFAWARGVGRAALRRRLS
HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLARLDGFVSAHPFTAILTLRLLPVGSALMLNLLAGVSGAGLRPFLLATLAGSLPQTVV
HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHH
FVLLGSGARIGHGWQVALAAVLFAGSAALGLWLMRRLANGDTVPLATATDRT
HHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]