| Definition | Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome. |
|---|---|
| Accession | NC_010125 |
| Length | 3,944,163 |
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The map label for this gene is podA [H]
Identifier: 162147113
GI number: 162147113
Start: 1318393
End: 1321083
Strand: Direct
Name: podA [H]
Synonym: GDI_1318
Alternate gene names: 162147113
Gene position: 1318393-1321083 (Clockwise)
Preceding gene: 162147110
Following gene: 162147114
Centisome position: 33.43
GC content: 70.2
Gene sequence:
>2691_bases ATGACGAAATGGGTCTATAGTTTCGGCGGTGCCGCCAACGAGGGCGGGGCCGGCATGCGCGACCTTCTGGGCGGCAAGGG TGCCAACCTGGCCGAAATGGCGGCGATCGGCCTGCCCGTCCCGCCCGGCTTCACCATCACCACCGAGGTCTGCACCCGGT TCTACGAAAACGGACGCGCCTATCCCGAAGACCTGCGCGCGCAGGTCGAAGCCGCGCTGGCCGGGGTCGAGGCGGCGCTG GGCCTGCGCTTCGGCGATCCGGCGGCGCCCCTGCTGGTCTCGGTCCGCTCGGGCGCGCGGGTGTCGATGCCGGGCATGAT GGATACCGTGCTGAATCTGGGCCTGAACGACGAAACGGTCGCCGGCCTGGCCGCCGCGTCGGGTGACGCGCGCTTCGCCT GGGACAGCTATCGCCGGTTCATCCAGATGTACGGCTCGGTCGTGCTGGGCGTGTCCCATCATCGGTTCGAGGATCTGATC GAGGAAACCAAGCGCGCGACCGGCGTGCAGGACGACACGAAGCTGACCGACCAGGACTGGCAGGAGGTCGTGACGGGCTA CAAGGAGATCGTGCTGCGCGAAACCGGCGCACCGTTCCCCACGGACCCGCACGCCCAGTTGTGGGGCGCGATCGGCGCGG TGTTCGGGTCCTGGATGAACCCGCGCGCCCATACCTATCGGCGGCTGCACGACATTCCCGCCGACTGGGGCACGGCGGTG AACGTGCAGGCGATGGTGTTCGGCAACATGGGCGCGGACTGCGCGACCGGCGTCTGCTTCACCCGCGATCCCTCGACGGG CGAAAACGTCTTCTACGGCGAATACCTGATCAACGCGCAGGGCGAGGACGTGGTGGCGGGCATCCGCACGCCGCAGCCGA TGTCCCAGGCGCGCGCGCATGACGGCGAACTGTCGATGGAACGCGCGCTGCCCGAGGCGTACCGCGAATTGCTGGCGGTG CGCGATATCCTGGAACGCCATTACCGCGACATGCAGGACATCGAATTCACCGTTCAGAACAACCGCCTGTACATGCTCCA GACCCGCACCGGCAAGCGGACGGCCGCCGCCGCCCTGCGCATCGCCATCGCGATGGCCGAGGAAGGCCTGATTACGCACG AGGAAGCGATCCGCCGCGTCCCGCCCTCGTCGCTCGACCAGCTGCTGCATCCGACGCTGGACCCGGACGCGCCGCGCACC ATGCTCAGCCGGGGGCTGCCGGCCTCGCCCGGGGCGGCGGCGGGCGCCATCGTGTTCAGCGCCGAGGACGTGGAAATCCG CGCCGCGCGGGGCGAGGACGTCATCCTGGTCCGTATCGAGACGTCGCCCGAGGACGTGCACGGCATGCACGCCGCGCGCG GCGTGCTGACCACGCGCGGCGGCATGACCTCGCACGCCGCCGTGGTGGCGCGCGGCATGGGGCGGGTCTGCGTGGCCGGT GCCGGCGGAATCCATGTCGATTACCGGGCGCGGACGCTGTCGGTCGGTGCGACGGTGCTGCATGAAGGCGACTGGATCAC CCTGGACGGCGCGACGGGCGAGGTCTTCGCCGGCCGGGTCGCGACCATCGAGCCGACTCTGTCGGGCGATTTCTCGACCC TGATGGGCTGGGCGGACAGCGTGCGCCGGATGAAGGTCCGCGCCAACGCCGAAACGCCCGACGATGCGCGGACCGCCCGG CATTTCGGCGCCGAGGGGATCGGCCTGTGCCGGACCGAGCACATGTTCTTCGCCCCCGACCGCATCGGCTTCATGCGGCA GATGATCATGGCCGGCGACGCGGCCGCGCGCATCCGGGCGATCGACGCCCTGCTGCCGTTCCAGCGCGAGGATTTCAAGG CGCTGTTCCGCATCATGGCGGGCCTGCCGGTGACGATCCGCCTGCTGGACCCGCCGCTGCACGAATTCCTGCCGCATGGC GAGGCCGAACTGGCCGAACTGGCCGCCGCGCTGGGCGAAAGCCCCGAGGCCGTGGCGGCGCGCCGGGCCGCGCTGTCGGA AGCCAACCCGATGCTGGGCCATCGCGGCTGCCGGCTGGGCCTGACCTATCCGGAACTCTACGCCATGCAGGCCCGCGCGA TCATCGAGGCCGCGATCGCCGTGTCCGCCGAAAGCGGGCAGCCGGTGGTTCCGGAAATCATGATTCCGCTGGTGGGGATG GACAGCGAACTGCGCCGCACCCGCGCCACCGTCGAACAGGCCGCGGCCGAAGCCCTGGAAGCGGCCGGCGTGTCGCTGGA TTTCAGCATCGGCACGATGATCGAACTGCCCCGCGCCGCGCTGACGGCCGACCGCATCGCGCAGGACGCCGATTTCTTCT CGTTCGGCACCAACGACCTGACGCAGACGACCTTCGGCCTGTCGCGCGACGATTCCGGCACCTTCATGCCCTTCTACCTG GAACATGACCTGATCCCGCGCGATCCGTTCATCTCGATCGACCAGGAGGGCGTGGGCCAGCTCGTCGCCATGGGGGCGGA ACGGGGCCGCCGCACCCGGCCGGGGCTGAAGCTCGGGGTCTGCGGCGAACATGGCGGCGATCCGGCCTCGATCGGCTTCT TCGAATCCGTGGGGCTGGATTACGTGTCGTGCTCGCCCTTCCGGGTGCCGATCGCGCGCCTGGCGGCGGCCCAGGCCGCG CTGGCGGGCCGCGCCGACCCTGTCGCGTCCTCCCGGGTCGCGTCGTCCTAG
Upstream 100 bases:
>100_bases AAAGTGGGGCGGAGTCCGGACAAGCAATCGAAAACAACAGTCCGGGACCAGGGGAAAGTCCACGCTTCACGCAGAATGGG GCGGGGCGAAGGAGATACCG
Downstream 100 bases:
>100_bases AGCGTGTGATCGGGTTACCCGATCACAGACTCCAGGTTTTTGTCTTCAGAGCAGCTTCACGTGATCAGGTGGTTCCACCT GATCACGATCTGCTCCAGGC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 896; Mature: 895
Protein sequence:
>896_residues MTKWVYSFGGAANEGGAGMRDLLGGKGANLAEMAAIGLPVPPGFTITTEVCTRFYENGRAYPEDLRAQVEAALAGVEAAL GLRFGDPAAPLLVSVRSGARVSMPGMMDTVLNLGLNDETVAGLAAASGDARFAWDSYRRFIQMYGSVVLGVSHHRFEDLI EETKRATGVQDDTKLTDQDWQEVVTGYKEIVLRETGAPFPTDPHAQLWGAIGAVFGSWMNPRAHTYRRLHDIPADWGTAV NVQAMVFGNMGADCATGVCFTRDPSTGENVFYGEYLINAQGEDVVAGIRTPQPMSQARAHDGELSMERALPEAYRELLAV RDILERHYRDMQDIEFTVQNNRLYMLQTRTGKRTAAAALRIAIAMAEEGLITHEEAIRRVPPSSLDQLLHPTLDPDAPRT MLSRGLPASPGAAAGAIVFSAEDVEIRAARGEDVILVRIETSPEDVHGMHAARGVLTTRGGMTSHAAVVARGMGRVCVAG AGGIHVDYRARTLSVGATVLHEGDWITLDGATGEVFAGRVATIEPTLSGDFSTLMGWADSVRRMKVRANAETPDDARTAR HFGAEGIGLCRTEHMFFAPDRIGFMRQMIMAGDAAARIRAIDALLPFQREDFKALFRIMAGLPVTIRLLDPPLHEFLPHG EAELAELAAALGESPEAVAARRAALSEANPMLGHRGCRLGLTYPELYAMQARAIIEAAIAVSAESGQPVVPEIMIPLVGM DSELRRTRATVEQAAAEALEAAGVSLDFSIGTMIELPRAALTADRIAQDADFFSFGTNDLTQTTFGLSRDDSGTFMPFYL EHDLIPRDPFISIDQEGVGQLVAMGAERGRRTRPGLKLGVCGEHGGDPASIGFFESVGLDYVSCSPFRVPIARLAAAQAA LAGRADPVASSRVASS
Sequences:
>Translated_896_residues MTKWVYSFGGAANEGGAGMRDLLGGKGANLAEMAAIGLPVPPGFTITTEVCTRFYENGRAYPEDLRAQVEAALAGVEAAL GLRFGDPAAPLLVSVRSGARVSMPGMMDTVLNLGLNDETVAGLAAASGDARFAWDSYRRFIQMYGSVVLGVSHHRFEDLI EETKRATGVQDDTKLTDQDWQEVVTGYKEIVLRETGAPFPTDPHAQLWGAIGAVFGSWMNPRAHTYRRLHDIPADWGTAV NVQAMVFGNMGADCATGVCFTRDPSTGENVFYGEYLINAQGEDVVAGIRTPQPMSQARAHDGELSMERALPEAYRELLAV RDILERHYRDMQDIEFTVQNNRLYMLQTRTGKRTAAAALRIAIAMAEEGLITHEEAIRRVPPSSLDQLLHPTLDPDAPRT MLSRGLPASPGAAAGAIVFSAEDVEIRAARGEDVILVRIETSPEDVHGMHAARGVLTTRGGMTSHAAVVARGMGRVCVAG AGGIHVDYRARTLSVGATVLHEGDWITLDGATGEVFAGRVATIEPTLSGDFSTLMGWADSVRRMKVRANAETPDDARTAR HFGAEGIGLCRTEHMFFAPDRIGFMRQMIMAGDAAARIRAIDALLPFQREDFKALFRIMAGLPVTIRLLDPPLHEFLPHG EAELAELAAALGESPEAVAARRAALSEANPMLGHRGCRLGLTYPELYAMQARAIIEAAIAVSAESGQPVVPEIMIPLVGM DSELRRTRATVEQAAAEALEAAGVSLDFSIGTMIELPRAALTADRIAQDADFFSFGTNDLTQTTFGLSRDDSGTFMPFYL EHDLIPRDPFISIDQEGVGQLVAMGAERGRRTRPGLKLGVCGEHGGDPASIGFFESVGLDYVSCSPFRVPIARLAAAQAA LAGRADPVASSRVASS >Mature_895_residues TKWVYSFGGAANEGGAGMRDLLGGKGANLAEMAAIGLPVPPGFTITTEVCTRFYENGRAYPEDLRAQVEAALAGVEAALG LRFGDPAAPLLVSVRSGARVSMPGMMDTVLNLGLNDETVAGLAAASGDARFAWDSYRRFIQMYGSVVLGVSHHRFEDLIE ETKRATGVQDDTKLTDQDWQEVVTGYKEIVLRETGAPFPTDPHAQLWGAIGAVFGSWMNPRAHTYRRLHDIPADWGTAVN VQAMVFGNMGADCATGVCFTRDPSTGENVFYGEYLINAQGEDVVAGIRTPQPMSQARAHDGELSMERALPEAYRELLAVR DILERHYRDMQDIEFTVQNNRLYMLQTRTGKRTAAAALRIAIAMAEEGLITHEEAIRRVPPSSLDQLLHPTLDPDAPRTM LSRGLPASPGAAAGAIVFSAEDVEIRAARGEDVILVRIETSPEDVHGMHAARGVLTTRGGMTSHAAVVARGMGRVCVAGA GGIHVDYRARTLSVGATVLHEGDWITLDGATGEVFAGRVATIEPTLSGDFSTLMGWADSVRRMKVRANAETPDDARTARH FGAEGIGLCRTEHMFFAPDRIGFMRQMIMAGDAAARIRAIDALLPFQREDFKALFRIMAGLPVTIRLLDPPLHEFLPHGE AELAELAAALGESPEAVAARRAALSEANPMLGHRGCRLGLTYPELYAMQARAIIEAAIAVSAESGQPVVPEIMIPLVGMD SELRRTRATVEQAAAEALEAAGVSLDFSIGTMIELPRAALTADRIAQDADFFSFGTNDLTQTTFGLSRDDSGTFMPFYLE HDLIPRDPFISIDQEGVGQLVAMGAERGRRTRPGLKLGVCGEHGGDPASIGFFESVGLDYVSCSPFRVPIARLAAAQAAL AGRADPVASSRVASS
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=463, Percent_Identity=25.4859611231102, Blast_Score=112, Evalue=1e-25, Organism=Escherichia coli, GI1789193, Length=426, Percent_Identity=26.2910798122066, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI1787994, Length=714, Percent_Identity=25.3501400560224, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI1788726, Length=447, Percent_Identity=24.3847874720358, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI48994992, Length=215, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=3e-14,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 96183; Mature: 96052
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKWVYSFGGAANEGGAGMRDLLGGKGANLAEMAAIGLPVPPGFTITTEVCTRFYENGRA CCCEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCC YPEDLRAQVEAALAGVEAALGLRFGDPAAPLLVSVRSGARVSMPGMMDTVLNLGLNDETV CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEECCHHHHHHHHCCCCCHHH AGLAAASGDARFAWDSYRRFIQMYGSVVLGVSHHRFEDLIEETKRATGVQDDTKLTDQDW HHEEECCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH QEVVTGYKEIVLRETGAPFPTDPHAQLWGAIGAVFGSWMNPRAHTYRRLHDIPADWGTAV HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEE NVQAMVFGNMGADCATGVCFTRDPSTGENVFYGEYLINAQGEDVVAGIRTPQPMSQARAH EEEEEEECCCCCHHHCCEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCC DGELSMERALPEAYRELLAVRDILERHYRDMQDIEFTVQNNRLYMLQTRTGKRTAAAALR CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCEEEEEEECCCCHHHHHHHH IAIAMAEEGLITHEEAIRRVPPSSLDQLLHPTLDPDAPRTMLSRGLPASPGAAAGAIVFS HHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEE AEDVEIRAARGEDVILVRIETSPEDVHGMHAARGVLTTRGGMTSHAAVVARGMGRVCVAG CCCCEEEEECCCCEEEEEEECCCCHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEC AGGIHVDYRARTLSVGATVLHEGDWITLDGATGEVFAGRVATIEPTLSGDFSTLMGWADS CCCEEEEEEEEEEEECEEEEECCCEEEEECCCCCEEECEEEEECCCCCCCHHHHHHHHHH VRRMKVRANAETPDDARTARHFGAEGIGLCRTEHMFFAPDRIGFMRQMIMAGDAAARIRA HHHEEEEECCCCCCHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHHCCHHHHHHH IDALLPFQREDFKALFRIMAGLPVTIRLLDPPLHEFLPHGEAELAELAAALGESPEAVAA HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHH RRAALSEANPMLGHRGCRLGLTYPELYAMQARAIIEAAIAVSAESGQPVVPEIMIPLVGM HHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCC DSELRRTRATVEQAAAEALEAAGVSLDFSIGTMIELPRAALTADRIAQDADFFSFGTNDL CHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHHHCCCHHCCCCCCH TQTTFGLSRDDSGTFMPFYLEHDLIPRDPFISIDQEGVGQLVAMGAERGRRTRPGLKLGV HHHHCCCCCCCCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEE CGEHGGDPASIGFFESVGLDYVSCSPFRVPIARLAAAQAALAGRADPVASSRVASS CCCCCCCCCCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCC >Mature Secondary Structure TKWVYSFGGAANEGGAGMRDLLGGKGANLAEMAAIGLPVPPGFTITTEVCTRFYENGRA CCEEEECCCCCCCCCCCHHHHHCCCCCCHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCC YPEDLRAQVEAALAGVEAALGLRFGDPAAPLLVSVRSGARVSMPGMMDTVLNLGLNDETV CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEECCHHHHHHHHCCCCCHHH AGLAAASGDARFAWDSYRRFIQMYGSVVLGVSHHRFEDLIEETKRATGVQDDTKLTDQDW HHEEECCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH QEVVTGYKEIVLRETGAPFPTDPHAQLWGAIGAVFGSWMNPRAHTYRRLHDIPADWGTAV HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEE NVQAMVFGNMGADCATGVCFTRDPSTGENVFYGEYLINAQGEDVVAGIRTPQPMSQARAH EEEEEEECCCCCHHHCCEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCCHHHHHCC DGELSMERALPEAYRELLAVRDILERHYRDMQDIEFTVQNNRLYMLQTRTGKRTAAAALR CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCEEEEEEECCCCHHHHHHHH IAIAMAEEGLITHEEAIRRVPPSSLDQLLHPTLDPDAPRTMLSRGLPASPGAAAGAIVFS HHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEE AEDVEIRAARGEDVILVRIETSPEDVHGMHAARGVLTTRGGMTSHAAVVARGMGRVCVAG CCCCEEEEECCCCEEEEEEECCCCHHHHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEEC AGGIHVDYRARTLSVGATVLHEGDWITLDGATGEVFAGRVATIEPTLSGDFSTLMGWADS CCCEEEEEEEEEEEECEEEEECCCEEEEECCCCCEEECEEEEECCCCCCCHHHHHHHHHH VRRMKVRANAETPDDARTARHFGAEGIGLCRTEHMFFAPDRIGFMRQMIMAGDAAARIRA HHHEEEEECCCCCCHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHHCCHHHHHHH IDALLPFQREDFKALFRIMAGLPVTIRLLDPPLHEFLPHGEAELAELAAALGESPEAVAA HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHHCCCHHHHHH RRAALSEANPMLGHRGCRLGLTYPELYAMQARAIIEAAIAVSAESGQPVVPEIMIPLVGM HHHHHHCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCC DSELRRTRATVEQAAAEALEAAGVSLDFSIGTMIELPRAALTADRIAQDADFFSFGTNDL CHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHCCHHHHHHHHHHHCCCHHCCCCCCH TQTTFGLSRDDSGTFMPFYLEHDLIPRDPFISIDQEGVGQLVAMGAERGRRTRPGLKLGV HHHHCCCCCCCCCCEEEEEEECCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEE CGEHGGDPASIGFFESVGLDYVSCSPFRVPIARLAAAQAALAGRADPVASSRVASS CCCCCCCCCCCCHHHHCCCCEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]