Click here to switch to the map view.

The map label for this gene is yhhS [C]

Identifier: 162147104

GI number: 162147104

Start: 1309876

End: 1311090

Strand: Direct

Name: yhhS [C]

Synonym: GDI_1309

Alternate gene names: 162147104

Gene position: 1309876-1311090 (Clockwise)

Preceding gene: 162147102

Following gene: 162147105

Centisome position: 33.21

GC content: 71.6

Gene sequence:

>1215_bases
ATGACGTCCTCGCGGCCCGGCCCGGCCCACCCTGCGGCCAATCCCACGCTGCGGATCCTGGCCGTCGTCCTGTTCAACCT
GATCTGCTACGTCGATATCGGCCTGCCGCTGGCGGTCATACCGGTCTTCGTCCATGGCACGCTGGGGTACAACACTGTCG
TCGCCGGGCTGGCGGTGTCGCTGCAATATCTGGCCACCTTCGCCTCGCGCGCGCAGGCCGGCCGGTTCGTCGACGGGCGG
GGGGCCAAGCCGGCGGTGATGATCGGGCTGGCCACCTGCGTCGCGGCCGGGGTGGCGCTGATGCTGGCGGGCCTGCTGTC
CGGCCACGCGGTACCGTCGGTCCTGCTGCTGATCACCAGCCGTATCCTGATGGGTGTGGGCGAAAGCTGGACCGCGACGG
GCGCCATCCTGTGGAATATCGGCCGGGTCGGCGCCGAACGCACGGCGCAGGTGATTTCGTGGAACGGCATCACCTCGTAT
GGCGGCATCGCCTTCGGCGCGCCGGTGGGGGCGCTGCTGTCGCAGCTTGCCCCGCCGATGGGCGGGCTGGCAGGGGTCGG
GCTGCTGTCGGCGGTGCTGCCGGCGGCGGGGCTGGTCCTGGCCACGCGGTACGCCCCGGTGCCGCCGATGACCAAGGGCG
AGACCATGCCGTTCAGCCAGGTGTTCTGGCGGGTCCTGCCCTACGGCATCGTGCTGGCGTGCGGTTCGGTGGGGTTCGGG
GCGATCTCGGCCTGCCTGTCGCTGTATTTCGCCGACCGGCACTGGGACGGGGCGGCGCTGGCGCTGATGATGTTCGGCGT
GGTCTTCGTGATGGTGCGGCTGCTCTTCTCGCGCCAGATCGGCCTGCGCGGCGGCCGGACCGTGGCTATCGTCTCGCTGC
TGGTCGAGGTCGCGGGCCTGCTGATCCTGTGGCGCAGCAGCGGGGTGCCCGCGGCCGACCTGGGCGCCGCGCTGACCGGC
GCCGGCTTCTCGCTGGTCTTCCCCGCCCTGGGGGTCGAGGCCGTGACGCGGGCCGGCCCGCAGAATCGCGGCGCCGCGCT
GGGGGTGTTCAGCGTCTTCCTCGATATCGGCATCGGCATATCGGGCCCGATGCTGGGGCTGGTGATCAACAGCCTGGGCT
ATGGGCCGATGTTTCTGGCCTCGGCCCTGTTTACCGGGGCGGGGGTCGGTGCCACTGTCCTGCTGCGGGGGGGCGCGCGC
CGAGGCACCCCCTGA

Upstream 100 bases:

>100_bases
CTCGCGCGGTCGTGACGGCCCTGCCGCCCCTTCGCCCGCTTGGCGAATGGCGAAGGGCACCCCTATGATGCCTGAAAAAG
AACGGAGTTCCCCCCTCGCC

Downstream 100 bases:

>100_bases
CGCCGCATGTCACGCCCAGAAGGATGAGGATTCATGTCCGTTGCTGCCGTCGCTGTGTTCTGTGGGTCGCGTTTCGGGGC
CCGTCCCGATTTCCTGGCGA

Product: major facilitator superfamily transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MTSSRPGPAHPAANPTLRILAVVLFNLICYVDIGLPLAVIPVFVHGTLGYNTVVAGLAVSLQYLATFASRAQAGRFVDGR
GAKPAVMIGLATCVAAGVALMLAGLLSGHAVPSVLLLITSRILMGVGESWTATGAILWNIGRVGAERTAQVISWNGITSY
GGIAFGAPVGALLSQLAPPMGGLAGVGLLSAVLPAAGLVLATRYAPVPPMTKGETMPFSQVFWRVLPYGIVLACGSVGFG
AISACLSLYFADRHWDGAALALMMFGVVFVMVRLLFSRQIGLRGGRTVAIVSLLVEVAGLLILWRSSGVPAADLGAALTG
AGFSLVFPALGVEAVTRAGPQNRGAALGVFSVFLDIGIGISGPMLGLVINSLGYGPMFLASALFTGAGVGATVLLRGGAR
RGTP

Sequences:

>Translated_404_residues
MTSSRPGPAHPAANPTLRILAVVLFNLICYVDIGLPLAVIPVFVHGTLGYNTVVAGLAVSLQYLATFASRAQAGRFVDGR
GAKPAVMIGLATCVAAGVALMLAGLLSGHAVPSVLLLITSRILMGVGESWTATGAILWNIGRVGAERTAQVISWNGITSY
GGIAFGAPVGALLSQLAPPMGGLAGVGLLSAVLPAAGLVLATRYAPVPPMTKGETMPFSQVFWRVLPYGIVLACGSVGFG
AISACLSLYFADRHWDGAALALMMFGVVFVMVRLLFSRQIGLRGGRTVAIVSLLVEVAGLLILWRSSGVPAADLGAALTG
AGFSLVFPALGVEAVTRAGPQNRGAALGVFSVFLDIGIGISGPMLGLVINSLGYGPMFLASALFTGAGVGATVLLRGGAR
RGTP
>Mature_403_residues
TSSRPGPAHPAANPTLRILAVVLFNLICYVDIGLPLAVIPVFVHGTLGYNTVVAGLAVSLQYLATFASRAQAGRFVDGRG
AKPAVMIGLATCVAAGVALMLAGLLSGHAVPSVLLLITSRILMGVGESWTATGAILWNIGRVGAERTAQVISWNGITSYG
GIAFGAPVGALLSQLAPPMGGLAGVGLLSAVLPAAGLVLATRYAPVPPMTKGETMPFSQVFWRVLPYGIVLACGSVGFGA
ISACLSLYFADRHWDGAALALMMFGVVFVMVRLLFSRQIGLRGGRTVAIVSLLVEVAGLLILWRSSGVPAADLGAALTGA
GFSLVFPALGVEAVTRAGPQNRGAALGVFSVFLDIGIGISGPMLGLVINSLGYGPMFLASALFTGAGVGATVLLRGGARR
GTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0226 family [H]

Homologues:

Organism=Escherichia coli, GI87082270, Length=381, Percent_Identity=43.0446194225722, Blast_Score=274, Evalue=9e-75,
Organism=Escherichia coli, GI1788662, Length=402, Percent_Identity=41.5422885572139, Blast_Score=222, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR023008 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41062; Mature: 40931

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSRPGPAHPAANPTLRILAVVLFNLICYVDIGLPLAVIPVFVHGTLGYNTVVAGLAVS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LQYLATFASRAQAGRFVDGRGAKPAVMIGLATCVAAGVALMLAGLLSGHAVPSVLLLITS
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RILMGVGESWTATGAILWNIGRVGAERTAQVISWNGITSYGGIAFGAPVGALLSQLAPPM
HHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHEEECCCCCCCCCHHCCCHHHHHHHHCCCC
GGLAGVGLLSAVLPAAGLVLATRYAPVPPMTKGETMPFSQVFWRVLPYGIVLACGSVGFG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
AISACLSLYFADRHWDGAALALMMFGVVFVMVRLLFSRQIGLRGGRTVAIVSLLVEVAGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LILWRSSGVPAADLGAALTGAGFSLVFPALGVEAVTRAGPQNRGAALGVFSVFLDIGIGI
HEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
SGPMLGLVINSLGYGPMFLASALFTGAGVGATVLLRGGARRGTP
CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TSSRPGPAHPAANPTLRILAVVLFNLICYVDIGLPLAVIPVFVHGTLGYNTVVAGLAVS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
LQYLATFASRAQAGRFVDGRGAKPAVMIGLATCVAAGVALMLAGLLSGHAVPSVLLLITS
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RILMGVGESWTATGAILWNIGRVGAERTAQVISWNGITSYGGIAFGAPVGALLSQLAPPM
HHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHEEECCCCCCCCCHHCCCHHHHHHHHCCCC
GGLAGVGLLSAVLPAAGLVLATRYAPVPPMTKGETMPFSQVFWRVLPYGIVLACGSVGFG
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
AISACLSLYFADRHWDGAALALMMFGVVFVMVRLLFSRQIGLRGGRTVAIVSLLVEVAGL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
LILWRSSGVPAADLGAALTGAGFSLVFPALGVEAVTRAGPQNRGAALGVFSVFLDIGIGI
HEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
SGPMLGLVINSLGYGPMFLASALFTGAGVGATVLLRGGARRGTP
CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA