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The map label for this gene is tetR [C]

Identifier: 162147078

GI number: 162147078

Start: 1280296

End: 1280967

Strand: Reverse

Name: tetR [C]

Synonym: GDI_1283

Alternate gene names: 162147078

Gene position: 1280967-1280296 (Counterclockwise)

Preceding gene: 162147085

Following gene: 162147077

Centisome position: 32.48

GC content: 63.39

Gene sequence:

>672_bases
GTGCGCCCCTGTCCCGACGAGGCAGTGGCCCAGGGCCCCGAAAAGCGCTGTCCCGGCCGCCCCCCGGTGCTGGAGGAAGG
CGAACGGCGGGAGATGATCCTGAATGCCGCGTGCCAGGTGCTGGACGATCACGGCTATCAGTCCGCGTCGATGGACAAGC
TGGCGCAACAGTCCGGCATGTCGAAAAAGACGATCTACCAGATGTTTCCGTCGAAGCACGACCTGTTCAGGACCCTGATC
AGCGAACGGCTGTTCGACATGAAGCATGCCTCGGTCTGTCCCTGCCGCGACCTGCCGCCCGAAGAGGAACTGGTGCAGAT
CCTGACCTCCATCGCCGCCAACGCGCTACAGGCCGACCGGATGTGCCTGATCCGCGCCATCGTCGGCGAAATCCGCGATT
CGGCGGAAATCCGCAAGATCATGCAGGACATCGAGATCAGTGGAAACTGCAACCAGGTCGAGGCCTGGCTGCGGCGCCAG
CAGGCCGCCGGCACCTACATGATCGACGATGTCGAGGATCTGGGCCACGGCCTGTTCAGCATGACGGTGGGCAAGCTGAT
CCTGGCGGAACTGTTCCATTGCCGCGATCCCGCGACGCCGGCCGAGATCGAGGCGAATATCCGCCGCTGGATCCGCATCT
TCCTGGGGGGGCTGGAGCAGATCGTTTATTAA

Upstream 100 bases:

>100_bases
GGAAACTATTTCGTTTCTAAAATCCGGTCAATGGCTGTCATTCCGATGCCGTGAAGGAGATTTCATGATGCCCGCACCCG
GGGCTGACATTTCGGACCTT

Downstream 100 bases:

>100_bases
GGCCGCGGCGCGCGCGATCGGGGTTCCGCGCGCCGGGAAAGAGGCTATCATCGGCGGGATGACCGGATCGACCAAGGATA
CCGCACGATGAGCGCCCGGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcription Regulator Protein; Transcription Regulator TetR; Transcriptional Regulator TetR

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRPCPDEAVAQGPEKRCPGRPPVLEEGERREMILNAACQVLDDHGYQSASMDKLAQQSGMSKKTIYQMFPSKHDLFRTLI
SERLFDMKHASVCPCRDLPPEEELVQILTSIAANALQADRMCLIRAIVGEIRDSAEIRKIMQDIEISGNCNQVEAWLRRQ
QAAGTYMIDDVEDLGHGLFSMTVGKLILAELFHCRDPATPAEIEANIRRWIRIFLGGLEQIVY

Sequences:

>Translated_223_residues
MRPCPDEAVAQGPEKRCPGRPPVLEEGERREMILNAACQVLDDHGYQSASMDKLAQQSGMSKKTIYQMFPSKHDLFRTLI
SERLFDMKHASVCPCRDLPPEEELVQILTSIAANALQADRMCLIRAIVGEIRDSAEIRKIMQDIEISGNCNQVEAWLRRQ
QAAGTYMIDDVEDLGHGLFSMTVGKLILAELFHCRDPATPAEIEANIRRWIRIFLGGLEQIVY
>Mature_223_residues
MRPCPDEAVAQGPEKRCPGRPPVLEEGERREMILNAACQVLDDHGYQSASMDKLAQQSGMSKKTIYQMFPSKHDLFRTLI
SERLFDMKHASVCPCRDLPPEEELVQILTSIAANALQADRMCLIRAIVGEIRDSAEIRKIMQDIEISGNCNQVEAWLRRQ
QAAGTYMIDDVEDLGHGLFSMTVGKLILAELFHCRDPATPAEIEANIRRWIRIFLGGLEQIVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25184; Mature: 25184

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPCPDEAVAQGPEKRCPGRPPVLEEGERREMILNAACQVLDDHGYQSASMDKLAQQSGM
CCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
SKKTIYQMFPSKHDLFRTLISERLFDMKHASVCPCRDLPPEEELVQILTSIAANALQADR
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MCLIRAIVGEIRDSAEIRKIMQDIEISGNCNQVEAWLRRQQAAGTYMIDDVEDLGHGLFS
HHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MTVGKLILAELFHCRDPATPAEIEANIRRWIRIFLGGLEQIVY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPCPDEAVAQGPEKRCPGRPPVLEEGERREMILNAACQVLDDHGYQSASMDKLAQQSGM
CCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
SKKTIYQMFPSKHDLFRTLISERLFDMKHASVCPCRDLPPEEELVQILTSIAANALQADR
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MCLIRAIVGEIRDSAEIRKIMQDIEISGNCNQVEAWLRRQQAAGTYMIDDVEDLGHGLFS
HHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
MTVGKLILAELFHCRDPATPAEIEANIRRWIRIFLGGLEQIVY
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA