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The map label for this gene is ydiU [C]

Identifier: 162147037

GI number: 162147037

Start: 1237038

End: 1238471

Strand: Reverse

Name: ydiU [C]

Synonym: GDI_1242

Alternate gene names: 162147037

Gene position: 1238471-1237038 (Counterclockwise)

Preceding gene: 162147038

Following gene: 162147036

Centisome position: 31.4

GC content: 66.39

Gene sequence:

>1434_bases
ATGCCCCTTTCACCCACCTACCGCCCCGCCCGCAATCACCTGACCCTGGGCGATGCGTTCTACGACCCGGTGGCGGCGGC
GGATTTTCCCGCCCATATCCTGCGCTTCCGCAACCAGGAGGCCGCGGCGCAGGTCGGGCTGGACGGCCTGACCGACGCGG
AATGGATCGATCATTTCGGCCGGTTCGTCCCGCTGCCGGACAACCTGCCGACACCGCTGGCCCTGCGTTATCACGGGCAT
CAGTTCCGGGCGTACAACCCCGACCTGGGCGACGGGCGGGGGTTCCTGTTCGCGCAGGTGCGCGATGTGCGGGACGGACG
GCTGCTGGATATCGGCACCAAGGGCAGCGGCCGCACGCCCTGGTCGCGCGGCGGCGACGGGCGGCTGACGCTGAAGGGCG
GGGTGCGCGAGATCCTGGCGACGGAAATGCTTGACGCGCTGGGGGTCGAGACCTCGCGCAGCCTGAGCGTGATCGAAACC
GGCGAGGCGCTGCATCGGGGGGACGAGCCCTCGCCCACCCGGTCATGCGTGCTGGCGCGGCTGAGCCATTCGCATATCCG
CATCGGCACGTTCCAGCGCCTGGCGGCCCTGGACGACCAGGCCAGCCTGGCGCACCTGGTGGCCTATGTGATGGACACCT
ACTTCCCCGACCGGGCCGGCGCGGGCGATCCGGCGCTGGCGCTGTTCGACATCGTCTGCGCCCGCGTCGCGCGCCTGGGC
GCGCAATGGATGGGGGCGGGGTTCGTCCACGGGGTCCTGAACACCGACAATATCAACGTCACGGGCGAAAGCTTCGATTA
CGGCCCGTGGCGCTTCCTGCCCCGCTACGATCCCGGCTTTACCGCCGCCTATTTCGACCACTCCGGCCTGTACGCCTTCG
GCCGCCAGCCGGAGGCCCTGCTGTGGAACCTGGCGCGGCTGGCCGAATGCCTGCTTCCGCTGACGAACGTTGACGGCCTG
CAGAAGATTTTCGACGATTTCCCAGATCGTTATGGAAAAGAGATGAACGGCGTGATCGTGAAACGCCTTGGCCTGTCATC
ACTTTCCGAAGCCGATGACCGCGCGCTGGCGGCCGCGGCATGGCGCTTTCTGGAACGATCGGCCATTGGATTTGAATCTT
TGTTCTTCGACTGGTATGGTGGAACGGACAGCAGGCACCGTGCCGCGAACGGCCCCAATGCCCGCCTCTACGAGGGTGCG
GATTTCGAACCATTGCTTCGGCAGATCGAATCCCATCCTGCCCGGCCGGGCCTGGATCTTTCCGATCCCTATTTTTCCCG
GGCCACGCCCTGCACGATGCTGGTCGATACCGTGGAGAGCATATGGCAGCCGATTGCAACCGATGACGACTGGGGCACGT
TGCACACCATGCTGGACACGATCGCACAGATGAAGGCGGCGCTGTCCGGGCCACCGCCGGGATCACCCGCATGA

Upstream 100 bases:

>100_bases
GGAGCGATGCGGCGATCGAGGCGTTCTTCGCCCCACGAGCGGACTCGTTGGACCTGCCGATCTTTTCCTGACTCGTCTCA
AGAGTTTTTGGTGACACAAG

Downstream 100 bases:

>100_bases
AGCCATGTACCGTGGCAAGGGGTGTGGCAGGAAAGTGAGCCTCTTTCCGAGCAAGGAGAACAGGATGCAGAATTTTTCAC
CGCAGGCCCCTTCGGTTCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MPLSPTYRPARNHLTLGDAFYDPVAAADFPAHILRFRNQEAAAQVGLDGLTDAEWIDHFGRFVPLPDNLPTPLALRYHGH
QFRAYNPDLGDGRGFLFAQVRDVRDGRLLDIGTKGSGRTPWSRGGDGRLTLKGGVREILATEMLDALGVETSRSLSVIET
GEALHRGDEPSPTRSCVLARLSHSHIRIGTFQRLAALDDQASLAHLVAYVMDTYFPDRAGAGDPALALFDIVCARVARLG
AQWMGAGFVHGVLNTDNINVTGESFDYGPWRFLPRYDPGFTAAYFDHSGLYAFGRQPEALLWNLARLAECLLPLTNVDGL
QKIFDDFPDRYGKEMNGVIVKRLGLSSLSEADDRALAAAAWRFLERSAIGFESLFFDWYGGTDSRHRAANGPNARLYEGA
DFEPLLRQIESHPARPGLDLSDPYFSRATPCTMLVDTVESIWQPIATDDDWGTLHTMLDTIAQMKAALSGPPPGSPA

Sequences:

>Translated_477_residues
MPLSPTYRPARNHLTLGDAFYDPVAAADFPAHILRFRNQEAAAQVGLDGLTDAEWIDHFGRFVPLPDNLPTPLALRYHGH
QFRAYNPDLGDGRGFLFAQVRDVRDGRLLDIGTKGSGRTPWSRGGDGRLTLKGGVREILATEMLDALGVETSRSLSVIET
GEALHRGDEPSPTRSCVLARLSHSHIRIGTFQRLAALDDQASLAHLVAYVMDTYFPDRAGAGDPALALFDIVCARVARLG
AQWMGAGFVHGVLNTDNINVTGESFDYGPWRFLPRYDPGFTAAYFDHSGLYAFGRQPEALLWNLARLAECLLPLTNVDGL
QKIFDDFPDRYGKEMNGVIVKRLGLSSLSEADDRALAAAAWRFLERSAIGFESLFFDWYGGTDSRHRAANGPNARLYEGA
DFEPLLRQIESHPARPGLDLSDPYFSRATPCTMLVDTVESIWQPIATDDDWGTLHTMLDTIAQMKAALSGPPPGSPA
>Mature_476_residues
PLSPTYRPARNHLTLGDAFYDPVAAADFPAHILRFRNQEAAAQVGLDGLTDAEWIDHFGRFVPLPDNLPTPLALRYHGHQ
FRAYNPDLGDGRGFLFAQVRDVRDGRLLDIGTKGSGRTPWSRGGDGRLTLKGGVREILATEMLDALGVETSRSLSVIETG
EALHRGDEPSPTRSCVLARLSHSHIRIGTFQRLAALDDQASLAHLVAYVMDTYFPDRAGAGDPALALFDIVCARVARLGA
QWMGAGFVHGVLNTDNINVTGESFDYGPWRFLPRYDPGFTAAYFDHSGLYAFGRQPEALLWNLARLAECLLPLTNVDGLQ
KIFDDFPDRYGKEMNGVIVKRLGLSSLSEADDRALAAAAWRFLERSAIGFESLFFDWYGGTDSRHRAANGPNARLYEGAD
FEPLLRQIESHPARPGLDLSDPYFSRATPCTMLVDTVESIWQPIATDDDWGTLHTMLDTIAQMKAALSGPPPGSPA

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=326, Percent_Identity=31.9018404907975, Blast_Score=167, Evalue=2e-41,
Organism=Escherichia coli, GI1787999, Length=310, Percent_Identity=36.7741935483871, Blast_Score=195, Evalue=7e-51,
Organism=Saccharomyces cerevisiae, GI6325034, Length=288, Percent_Identity=29.1666666666667, Blast_Score=130, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 52427; Mature: 52295

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS50127 UBIQUITIN_CONJUGAT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLSPTYRPARNHLTLGDAFYDPVAAADFPAHILRFRNQEAAAQVGLDGLTDAEWIDHFG
CCCCCCCCCCCCCEEECHHHHCCHHHCCHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHCC
RFVPLPDNLPTPLALRYHGHQFRAYNPDLGDGRGFLFAQVRDVRDGRLLDIGTKGSGRTP
CEEECCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCC
WSRGGDGRLTLKGGVREILATEMLDALGVETSRSLSVIETGEALHRGDEPSPTRSCVLAR
CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHH
LSHSHIRIGTFQRLAALDDQASLAHLVAYVMDTYFPDRAGAGDPALALFDIVCARVARLG
HCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
AQWMGAGFVHGVLNTDNINVTGESFDYGPWRFLPRYDPGFTAAYFDHSGLYAFGRQPEAL
HHHHCCHHHEEEEECCCEEECCCCCCCCCCEECCCCCCCCEEEEECCCCCEECCCCHHHH
LWNLARLAECLLPLTNVDGLQKIFDDFPDRYGKEMNGVIVKRLGLSSLSEADDRALAAAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHCCHHHHHHHHHHHHHHH
WRFLERSAIGFESLFFDWYGGTDSRHRAANGPNARLYEGADFEPLLRQIESHPARPGLDL
HHHHHHHHCCHHHHHEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCC
SDPYFSRATPCTMLVDTVESIWQPIATDDDWGTLHTMLDTIAQMKAALSGPPPGSPA
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PLSPTYRPARNHLTLGDAFYDPVAAADFPAHILRFRNQEAAAQVGLDGLTDAEWIDHFG
CCCCCCCCCCCCEEECHHHHCCHHHCCHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHCC
RFVPLPDNLPTPLALRYHGHQFRAYNPDLGDGRGFLFAQVRDVRDGRLLDIGTKGSGRTP
CEEECCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCC
WSRGGDGRLTLKGGVREILATEMLDALGVETSRSLSVIETGEALHRGDEPSPTRSCVLAR
CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCCCHHHHHHHHH
LSHSHIRIGTFQRLAALDDQASLAHLVAYVMDTYFPDRAGAGDPALALFDIVCARVARLG
HCCCEEEEHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
AQWMGAGFVHGVLNTDNINVTGESFDYGPWRFLPRYDPGFTAAYFDHSGLYAFGRQPEAL
HHHHCCHHHEEEEECCCEEECCCCCCCCCCEECCCCCCCCEEEEECCCCCEECCCCHHHH
LWNLARLAECLLPLTNVDGLQKIFDDFPDRYGKEMNGVIVKRLGLSSLSEADDRALAAAA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHCCHHHHHHCCHHHHHHHHHHHHHHH
WRFLERSAIGFESLFFDWYGGTDSRHRAANGPNARLYEGADFEPLLRQIESHPARPGLDL
HHHHHHHHCCHHHHHEEECCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCC
SDPYFSRATPCTMLVDTVESIWQPIATDDDWGTLHTMLDTIAQMKAALSGPPPGSPA
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]