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The map label for this gene is yagA [C]

Identifier: 162146888

GI number: 162146888

Start: 1076510

End: 1077325

Strand: Direct

Name: yagA [C]

Synonym: GDI_1078

Alternate gene names: 162146888

Gene position: 1076510-1077325 (Clockwise)

Preceding gene: 162146887

Following gene: 162146890

Centisome position: 27.29

GC content: 63.97

Gene sequence:

>816_bases
ATGACCGAACGGGATTACTCGCAGCGGCGGGCTTGTCGGCTCATTGGTATGGACCCGAAGACGTGGCGCTATACGTCACG
CCGCCCGGATGAAGCCGAGGCGCGTGGCCGGCTGCGGGAACTGGCGGGAGAGCGGCGCCGGTTCGGCTATCGGCGCCTGC
ACATCCTCCTGGAGCGCGAGGGAGTAACCATGAACCACAAGAAGCTGTTTCGGCTGTATCGCGAGGAAGGACTGTCGGTC
CGCAAGCGTGGTGGCCGGAAACGGGCGCTGGGCACGCGCTCGCCAATGGTACTGCCCGACGGGCCGAACCAGCGCTGGAG
CCTGGACTTCGTGTCGGACGCGCTGAACAACGGACGGCGGTTCCGGGTGCTGACGGTGGTCGACGACTACACCCGGGAAT
GCCTCGGTCTGGTCGCCGACACATCGCTGTCGGGCGAACGGCTTGGCCGCGAACTGGACCGGATCGCAGAAAGCCGAGGC
TTTCCCATGATGATCGTCAGCGACAACGGCACCGAGATGACCTCGAACGCGATCTTGGCCTGGCAGGAAAAGCGGTCGGT
GCTGTGGCACTATATCGCACCGGGAAAGCCGCAGCAGAACGGGTTCGTCGAGAGTTTCAACGGCCGGTTCCGCGACGAAT
GCCTCAACGAGCACCTGTTCCGTAACCTCGGCCACGCCCGGTCGGTCATCGGCGCATGGCGGGCCGACTACAACGCTGTC
AGGCCCCACACCAGCCTCAATGGCATGACGCCAGAGGCTTTCGCTCAACACGCCACCAAGGCATACAACAACCCACAGGC
CCTAACTGAAATCTGA

Upstream 100 bases:

>100_bases
GGCTCCTGGCGGAGAGCGTGATGGACGTCTCGACGCTGAAGGAACTGCTGGCAAAAAACTCGTGACGCCCGGTTTGCGGC
GGGACGCCGTGACCTGGGCG

Downstream 100 bases:

>100_bases
GGGCATGTTCGGGACAGGATCAATTTGGATCATGCTGTGGGCGGCGCTCCAAGATAAGCGCAATTAGCTGATTCAGGTTA
CCCGTGTCCATGGCTCATAT

Product: integrase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTERDYSQRRACRLIGMDPKTWRYTSRRPDEAEARGRLRELAGERRRFGYRRLHILLEREGVTMNHKKLFRLYREEGLSV
RKRGGRKRALGTRSPMVLPDGPNQRWSLDFVSDALNNGRRFRVLTVVDDYTRECLGLVADTSLSGERLGRELDRIAESRG
FPMMIVSDNGTEMTSNAILAWQEKRSVLWHYIAPGKPQQNGFVESFNGRFRDECLNEHLFRNLGHARSVIGAWRADYNAV
RPHTSLNGMTPEAFAQHATKAYNNPQALTEI

Sequences:

>Translated_271_residues
MTERDYSQRRACRLIGMDPKTWRYTSRRPDEAEARGRLRELAGERRRFGYRRLHILLEREGVTMNHKKLFRLYREEGLSV
RKRGGRKRALGTRSPMVLPDGPNQRWSLDFVSDALNNGRRFRVLTVVDDYTRECLGLVADTSLSGERLGRELDRIAESRG
FPMMIVSDNGTEMTSNAILAWQEKRSVLWHYIAPGKPQQNGFVESFNGRFRDECLNEHLFRNLGHARSVIGAWRADYNAV
RPHTSLNGMTPEAFAQHATKAYNNPQALTEI
>Mature_270_residues
TERDYSQRRACRLIGMDPKTWRYTSRRPDEAEARGRLRELAGERRRFGYRRLHILLEREGVTMNHKKLFRLYREEGLSVR
KRGGRKRALGTRSPMVLPDGPNQRWSLDFVSDALNNGRRFRVLTVVDDYTRECLGLVADTSLSGERLGRELDRIAESRGF
PMMIVSDNGTEMTSNAILAWQEKRSVLWHYIAPGKPQQNGFVESFNGRFRDECLNEHLFRNLGHARSVIGAWRADYNAVR
PHTSLNGMTPEAFAQHATKAYNNPQALTEI

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=239, Percent_Identity=27.1966527196653, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789981, Length=238, Percent_Identity=26.4705882352941, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790724, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789424, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1789224, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788305, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787669, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1786558, Length=257, Percent_Identity=24.124513618677, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31338; Mature: 31207

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERDYSQRRACRLIGMDPKTWRYTSRRPDEAEARGRLRELAGERRRFGYRRLHILLERE
CCCCHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
GVTMNHKKLFRLYREEGLSVRKRGGRKRALGTRSPMVLPDGPNQRWSLDFVSDALNNGRR
CCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHCCCCE
FRVLTVVDDYTRECLGLVADTSLSGERLGRELDRIAESRGFPMMIVSDNGTEMTSNAILA
EEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCCEEE
WQEKRSVLWHYIAPGKPQQNGFVESFNGRFRDECLNEHLFRNLGHARSVIGAWRADYNAV
EEHHCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPHTSLNGMTPEAFAQHATKAYNNPQALTEI
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure 
TERDYSQRRACRLIGMDPKTWRYTSRRPDEAEARGRLRELAGERRRFGYRRLHILLERE
CCCHHHHHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECC
GVTMNHKKLFRLYREEGLSVRKRGGRKRALGTRSPMVLPDGPNQRWSLDFVSDALNNGRR
CCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCEEECCCCCCCEEHHHHHHHHCCCCE
FRVLTVVDDYTRECLGLVADTSLSGERLGRELDRIAESRGFPMMIVSDNGTEMTSNAILA
EEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEECCCCEEE
WQEKRSVLWHYIAPGKPQQNGFVESFNGRFRDECLNEHLFRNLGHARSVIGAWRADYNAV
EEHHCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPHTSLNGMTPEAFAQHATKAYNNPQALTEI
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]